Remnant kenngoor (Phascogale calura) retain genetic connectivity and genetic diversity in a highly fragmented landscape

被引:0
作者
de Visser, Rhiannon S. J. [1 ]
Hall, Michelle [1 ,2 ]
Ottewell, Kym [1 ,3 ]
Pierson, Jennifer C. [4 ]
Sanders, Angela [2 ]
Friend, J. Anthony [5 ]
Berry, Laurence [4 ,6 ]
Hogg, Carolyn [7 ]
Catullo, Renee A. [1 ]
机构
[1] Univ Western Australia, Sch Biol Sci, Perth, WA, Australia
[2] Bush Heritage Australia, Melbourne, Vic, Australia
[3] Dept Biodivers Biodivers & Conservat Sci Conservat, Kensington, WA, Australia
[4] Australian Wildlife Conservancy, Subiaco, WA, Australia
[5] Dept Biodivers Biodivers & Conservat Sci Conservat, Albany, WA, Australia
[6] Dept Energy Environm & Climate Act, Melbourne, Vic, Australia
[7] Univ Sydney, Sch Life & Environm Sci, Sydney, NSW, Australia
关键词
Conservation translocation; population genetics; habitat fragmentation; Marsupial; Dasyuridae; EFFECTIVE POPULATION-SIZE; RED-TAILED PHASCOGALE; LINKAGE DISEQUILIBRIUM; PAIRWISE RELATEDNESS; HABITAT FRAGMENTATION; R PACKAGE; N-E; CONSERVATION; EXTINCTION; GENOMICS;
D O I
10.1007/s10592-024-01603-z
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Kenngoor (Phascogale calura) persist in < 1% of their original distribution, occupying highly fragmented remnant habitat in south-west Western Australia, with very little known of the genetic diversity of the remaining wild populations. Recently, the species has been translocated to managed reserves to improve its conservation. Understanding genetic structure and patterns of genetic diversity is crucial to inform conservation translocations for species recovery. This study aims to (1) assess genetic structure and genetic diversity across remaining wild locations, (2) assess long-term genetic outcomes of a mixed-source wild-to-wild translocation, and (3) estimate global effective population size. We genotyped 209 samples from 13 locations of fragmented remnant habitat using reduced representation sequencing. An isolation by distance model best explained genetic structure across the survey areas, with evidence of fine scale divergence of two northern locations. Allelic richness and autosomal heterozygosity measures indicated that diversity is spread uniformly across locations, and no locations showed signs of inbreeding or strong genetic drift. The mixed-source translocation has retained the diversity of the wider species ten years post-translocation. Overall, our results suggest that connectivity between survey areas has largely been maintained and that no location has substantially lower genetic diversity, despite the highly fragmented nature of remnant kenngoor habitat. Future translocations should aim to represent a mixture of genetically divergent locations to maintain the diversity present at the species level. Ongoing conservation management will be required to ensure the long-term viability of the species in this fragmented landscape.
引用
收藏
页码:789 / 803
页数:15
相关论文
共 89 条
[1]  
Aitken S. N., 2012, Conservation and the genetics of populations, V2nd edition
[2]   Matrix structure obscures the relationship between interpatch movement and patch size and isolation [J].
Bender, DJ ;
Fahrig, L .
ECOLOGY, 2005, 86 (04) :1023-1033
[3]   Trapped in the extinction vortex? Strong genetic effects in a declining vertebrate population [J].
Blomqvist, Donald ;
Pauliny, Angela ;
Larsson, Mikael ;
Flodin, Lars-Ake .
BMC EVOLUTIONARY BIOLOGY, 2010, 10
[4]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[5]  
Bradley A.J., 2008, The Mammals of Australia', V3rd, P101
[6]   Reproduction and life history in the red-tailed phascogale, Phascogale calura (Marsupialia: Dasyuridae): The adaptive-stress senescence hypothesis [J].
Bradley, AJ .
JOURNAL OF ZOOLOGY, 1997, 241 :739-755
[7]   The first Antechinus reference genome provides a resource for investigating the genetic basis of semelparity and age-related neuropathologies [J].
Brandies, Parice A. ;
Tang, Simon ;
Johnson, Robert S. P. ;
Hogg, Carolyn J. ;
Belov, Katherine .
GIGABYTE, 2020, 2020 :1-22
[8]   Synergies among extinction drivers under global change [J].
Brook, Barry W. ;
Sodhi, Naviot S. ;
Bradshaw, Corey J. A. .
TRENDS IN ECOLOGY & EVOLUTION, 2008, 23 (08) :453-460
[9]  
Burbidge A.A., 2019, PHASCOGALE CALURA IU, V2019, DOI [10.2305/IUCN.UK.2019-2.RLTS.T16888A21944219.en, DOI 10.2305/IUCN.UK.2019-2.RLTS.T16888A21944219.EN]
[10]   Conservation status and biogeography of Australia's terrestrial mammals [J].
Burbidge, Andrew A. ;
McKenzie, N. L. ;
Brennan, K. E. C. ;
Woinarski, J. C. Z. ;
Dickman, C. R. ;
Baynes, A. ;
Gordon, G. ;
Menkhorst, P. W. ;
Robinson, A. C. .
AUSTRALIAN JOURNAL OF ZOOLOGY, 2008, 56 (06) :411-422