m6A promotes planarian regeneration

被引:6
作者
Cui, Guanshen [1 ,2 ,3 ,4 ]
Zhou, Jia-Yi [1 ,2 ]
Ge, Xin-Yang [1 ,2 ,3 ]
Sun, Bao-Fa [1 ,2 ]
Song, Ge-Ge [1 ,2 ]
Wang, Xing [1 ,2 ]
Wang, Xiu-Zhi [1 ,2 ,3 ]
Zhang, Rui [5 ]
Wang, Hai-Lin [5 ]
Jing, Qing [6 ,7 ]
Koziol, Magdalena J. [8 ]
Zhao, Yong-Liang [1 ,2 ,9 ]
Zeng, An [9 ]
Zhang, Wei-Qi [1 ,2 ,10 ,11 ]
Han, Da-Li [1 ,2 ,3 ,10 ,11 ]
Yang, Yun-Gui [1 ,2 ,3 ,4 ,10 ,11 ]
Yang, Ying [1 ,2 ,3 ,4 ,10 ,11 ]
机构
[1] Chinese Acad Sci, Beijing Inst Genom, Coll Future Technol, Collaborat Innovat Ctr Genet & Dev,CAS Key Lab Gen, Beijing, Peoples R China
[2] China Natl Ctr Bioinformat, Beijing, Peoples R China
[3] Univ Chinese Acad Sci, Sino Danish Coll, Beijing, Peoples R China
[4] Chinese Acad Sci, Inst Stem Cell & Regenerat, Beijing, Peoples R China
[5] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Environm Chem & Ecotoxicol, Beijing, Peoples R China
[6] Shanghai Jiao Tong Univ, Inst Nutr & Hlth, Chinese Acad Sci, Sch Med, Shanghai, Peoples R China
[7] Chinese Acad Sci, Inst Nutr & Hlth, CAS Key Lab Tissue Microenvironm & Tumor, Shanghai, Peoples R China
[8] Chinese Acad Med Sci, Chinese Inst Brain Res Beijing, Res Unit Med Neurobiol, Beijing, Peoples R China
[9] Univ Chinese Acad Sci, Chinese Acad Sci, Shanghai Inst Biochem & Cell Biol, CAS Ctr Excellence Mol Cell Sci,State Key Lab Cell, Shanghai, Peoples R China
[10] Chinese Acad Sci, Beijing Inst Genom, Coll Future Technol, Collaborat Innovat Ctr Genet & Dev,CAS Key Lab Gen, Beijing 100101, Peoples R China
[11] China Natl Ctr Bioinformat, Beijing 100101, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
MESSENGER-RNA METHYLATION; STEM-CELLS; NUCLEAR-RNA; GENE FAMILY; PROTEIN; EXPRESSION; CDK7; N6-METHYLADENOSINE; TRANSCRIPTION; PROGRANULIN;
D O I
10.1111/cpr.13481
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Regeneration is the regrowth of damaged tissues or organs, a vital process in response to damages from primitive organisms to higher mammals. Planarian possesses active whole-body regenerative capability owing to its vast reservoir of adult stem cells, neoblasts, providing an ideal model to delineate the underlying mechanisms for regeneration. RNA N-6-methyladenosine (m(6)A) modification participates in many biological processes, including stem cell self-renewal and differentiation, in particular the regeneration of haematopoietic stem cells and axons. However, how m(6)A controls regeneration at the whole-organism level remains largely unknown. Here, we demonstrate that the depletion of m(6)A methyltransferase regulatory subunit wtap abolishes planarian regeneration, potentially through regulating genes related to cell-cell communication and cell cycle. Single-cell RNA-seq (scRNA-seq) analysis unveils that the wtap knockdown induces a unique type of neural progenitor-like cells (NP-like cells), characterized by specific expression of the cell-cell communication ligand grn. Intriguingly, the depletion of m(6)A-modified transcripts grn, cdk9 or cdk7 partially rescues the defective regeneration of planarian caused by wtap knockdown. Overall, our study reveals an indispensable role of m(6)A modification in regulating whole-organism regeneration.
引用
收藏
页数:19
相关论文
共 81 条
  • [1] Gradients in Planarian Regeneration and Homeostasis
    Adell, Teresa
    Cebria, Francesc
    Salo, Emili
    [J]. COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2010, 2 (01): : a000505
  • [2] Accelerated Lipofuscinosis and Ubiquitination in Granulin Knockout Mice Suggest a Role for Progranulin in Successful Aging
    Ahmed, Zeshan
    Sheng, Hong
    Xu, Ya-fei
    Lin, Wen-Lang
    Innes, Amy E.
    Gass, Jennifer
    Yu, Xin
    Hou, Harold
    Chiba, Shuichi
    Yamanouchi, Keitaro
    Leissring, Malcolm
    Petrucelli, Leonard
    Nishihara, Masugi
    Hutton, Michael L.
    McGowan, Eileen
    Dickson, Dennis W.
    Lewis, Jada
    [J]. AMERICAN JOURNAL OF PATHOLOGY, 2010, 177 (01) : 311 - 324
  • [3] Alexa A., 2010, TOPGO ENRICHMENT ANA
  • [4] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [5] Bridging the regeneration gap: genetic insights from diverse animal models
    Alvarado, Alejandro Sanchez
    Tsonis, Panagiotis A.
    [J]. NATURE REVIEWS GENETICS, 2006, 7 (11) : 873 - 884
  • [6] Restoring neuronal progranulin reverses deficits in a mouse model of frontotemporal dementia
    Arrant, Andrew E.
    Filiano, Anthony J.
    Unger, Daniel E.
    Young, Allen H.
    Roberson, Erik D.
    [J]. BRAIN, 2017, 140 : 1447 - 1465
  • [7] The granulin gene family: from cancer to dementia
    Bateman, Andrew
    Bennett, Hugh P. J.
    [J]. BIOESSAYS, 2009, 31 (11) : 1245 - 1254
  • [8] m6A RNA Modification Controls Cell Fate Transition in Mammalian Embryonic Stem Cells
    Batista, Pedro J.
    Molinie, Benoit
    Wang, Jinkai
    Qu, Kun
    Zhang, Jiajing
    Li, Lingjie
    Bouley, Donna M.
    Lujan, Ernesto
    Haddad, Bahareh
    Daneshvar, Kaveh
    Carter, Ava C.
    Flynn, Ryan A.
    Zhou, Chan
    Lim, Kok-Seong
    Dedon, Peter
    Wernig, Marius
    Mullen, Alan C.
    Xing, Yi
    Giallourakis, Cosmas C.
    Chang, Howard Y.
    [J]. CELL STEM CELL, 2014, 15 (06) : 707 - 719
  • [9] Genome-wide survey of protein kinases required for cell cycle progression
    Bettencourt-Dias, M
    Giet, R
    Sinka, R
    Mazumdar, A
    Lock, WG
    Balloux, F
    Zafiropoulos, PJ
    Yamaguchi, S
    Winter, S
    Carthew, RW
    Cooper, M
    Jones, D
    Frenz, L
    Glover, DM
    [J]. NATURE, 2004, 432 (7020) : 980 - 987
  • [10] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120