Rapid Vector-Based Peak Fitting and Resolution Enhancement for Correlation Analyses of Raman Hyperspectra

被引:3
作者
Schulze, H. Georg
Rangan, Shreyas [1 ,2 ]
Vardaki, Martha Z. [3 ]
Blades, Michael W. [4 ]
Turner, Robin F. B. [1 ,4 ,5 ]
Piret, James M. [1 ,2 ,6 ]
机构
[1] Univ British Columbia, Michael Smith Labs, 2185 East Mall, Vancouver, BC V6T 1Z4, Canada
[2] Univ British Columbia, Sch Biomed Engn, Vancouver, BC, Canada
[3] Natl Hellen Res Fdn, Inst Chem Biol, Athens, Greece
[4] Univ British Columbia, Dept Chem, Vancouver, BC, Canada
[5] Univ British Columbia, Dept Elect & Comp Engn, Vancouver, BC, Canada
[6] Univ British Columbia, Dept Chem & Biol Engn, Vancouver, BC, Canada
基金
加拿大自然科学与工程研究理事会; 加拿大健康研究院;
关键词
Raman spectroscopy; peak fitting; Gaussian distributions; resolution enhancement; two-dimensional correlation spectroscopy; 2D-COS; principal component analysis; PCA; correlation structure; mammalian cells; 2-DIMENSIONAL CORRELATION; CORRELATION SPECTROSCOPY; AUTOMATED DECOMPOSITION; SPECTRA;
D O I
10.1177/00037028231176805
中图分类号
TH7 [仪器、仪表];
学科分类号
0804 ; 080401 ; 081102 ;
摘要
Spectroscopic peak parameters are important since they provide information about the analyte under study. Besides obtaining these parameters, peak fitting also resolves overlapped peaks. Thus, the obtained parameters should permit the construction of a higher-resolution version of the original spectrum. However, peak fitting is not an easy task due to computational reasons and because the true nature of the analyte is often unknown. These difficulties are major impediments when large hyperspectral data sets need to be processed rapidly, such as for manufacturing process control. We have developed a novel and relatively fast two-part algorithm to perform peak fitting and resolution enhancement on such data sets. In the first part of the algorithm, estimates of the total number of bands and their parameters were obtained from a representative spectrum in the data set, using a combination of techniques. Starting with these parameter estimates, all the spectra were then iteratively and rapidly fitted with Gaussian bands, exploiting intrinsic features of the Gaussian distribution with vector operations. The best fits for each spectrum were retained. By reducing the obtained bandwidths and commensurately increasing their amplitudes, high-resolution spectra were constructed that greatly improved correlation-based analyses. We tested the performance of the algorithm on synthetic spectra to confirm that this method could recover the ground truth correlations between highly overlapped peaks. To assess effective peak resolution, the method was applied to low-resolution spectra of glucose and compared to results from high-resolution spectra. We then processed a larger spectral data set from mammalian cells, fixed with methanol or air drying, to demonstrate the resolution enhancement of the algorithm on complex spectra and the effects of resolution-enhanced spectra on two-dimensional correlation spectroscopy and principal component analyses. The results indicated that the algorithm would allow users to obtain high-resolution spectra relatively fast and permit the recovery of important aspects of the data's intrinsic correlation structure. Graphical AbstractThis is a visual representation of the abstract.
引用
收藏
页码:957 / 969
页数:13
相关论文
共 26 条
[1]   Principal component analysis [J].
Abdi, Herve ;
Williams, Lynne J. .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS, 2010, 2 (04) :433-459
[2]   INSTRUMENTAL DISTORTIONS OF RAMAN LINES [J].
ARORA, AK ;
UMADEVI, V .
APPLIED SPECTROSCOPY, 1982, 36 (04) :424-427
[3]   Computationally efficient curve-fitting procedure for large two-dimensional experimental infrared spectroscopic arrays using the Pearson VII model [J].
Chen, L ;
Garland, M .
APPLIED SPECTROSCOPY, 2003, 57 (03) :331-337
[4]   Automated decomposition algorithm for Raman spectra based on a Voigt line profile model [J].
Chen, Yunliang ;
Dai, Liankui .
APPLIED OPTICS, 2016, 55 (15) :4085-4094
[5]   Fixation methods for the study of lipid droplets by immunofluorescence microscopy [J].
DiDonato, D ;
Brasaemle, DL .
JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY, 2003, 51 (06) :773-780
[6]   2D correlation spectroscopy and multivariate curve resolution in analyzing pH-dependent evolving systems monitored by FT-IR spectroscopy, a comparative study [J].
Diewok, J ;
Ayora-Cañada, MJ ;
Lendl, B .
ANALYTICAL CHEMISTRY, 2002, 74 (19) :4944-4954
[7]   Assessment of the effect of imputation of missing values on the performance of Phase II multivariate control charts [J].
Fernandez, Julia I. ;
Pagura, Jose A. ;
Quaglino, Marta B. .
QUALITY AND RELIABILITY ENGINEERING INTERNATIONAL, 2021, 37 (04) :1664-1677
[8]   GENERALIZED 2-DIMENSIONAL CORRELATION METHOD APPLICABLE TO INFRARED, RAMAN, AND OTHER TYPES OF SPECTROSCOPY [J].
NODA, I .
APPLIED SPECTROSCOPY, 1993, 47 (09) :1329-1336
[9]   Techniques useful in two-dimensional correlation and codistribution spectroscopy (2DCOS and 2DCDS) analyses [J].
Noda, Isao .
JOURNAL OF MOLECULAR STRUCTURE, 2016, 1124 :29-41
[10]   Recent progresses in two-dimensional correlation spectroscopy (2D-COS) [J].
Park, Yeonju ;
Jin, Sila ;
Noda, Isao ;
Jung, Young Mee .
JOURNAL OF MOLECULAR STRUCTURE, 2018, 1168 :1-21