Whole-genome sequencing and characterization of Escherichia coli human isolate DP033

被引:0
|
作者
Liu, Yanhong [1 ]
Kanrar, Siddhartha [1 ]
Elder, Jacob [1 ]
Ream, Amy [1 ]
Huang, Lihan [1 ]
Gehring, Andrew [1 ]
Uhlich, Gaylen [1 ]
Clabots, Connie [2 ]
Johnson, James R. [2 ,3 ]
机构
[1] Eastern Reg Res Ctr, Agr Res Serv, Dept Agr, Wyndmoor, PA 19038 USA
[2] Minneapolis VA Hlth Care Syst, Minneapolis, MN USA
[3] Univ Minnesota, Dept Med, Div Infect Dis & Int Med, Minneapolis, MN USA
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 01期
关键词
extraintestinal diseases; Escherichia coli (ExPEC); chicken meat; RETAIL CHICKEN MEAT; GENES;
D O I
10.1128/mra.00792-23
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The whole-genome sequence of Escherichia coli strain DP033 is reported here. DP033 was isolated from a human rectal specimen in Tilburg, the Netherlands. In silico analysis showed that DP033 possessed 36 virulence-related genes and is a presumptive extraintestinal pathogenic E. coli and uropathogenic E. coli strain.
引用
收藏
页数:3
相关论文
共 50 条
  • [1] Characteristics, Whole-Genome Sequencing and Pathogenicity Analysis of Escherichia coli from a White Feather Broiler Farm
    Wu, Shaopeng
    Cui, Lulu
    Han, Yu
    Lin, Fang
    Huang, Jiaqi
    Song, Mengze
    Lan, Zouran
    Sun, Shuhong
    MICROORGANISMS, 2023, 11 (12)
  • [2] Whole-Genome Sequencing for Risk Assessment of Long-term Shiga Toxin-producing Escherichia coli
    Knobloch, Johannes K. -M.
    Niemann, Stefan
    Kohl, Thomas A.
    Lindner, Ulrich
    Nitschke, Martin
    Sayk, Friedhelm
    Solbach, Werner
    EMERGING INFECTIOUS DISEASES, 2014, 20 (04) : 732 - 733
  • [3] Whole genome sequencing analysis of enteropathogenic Escherichia coli from human and companion animals in Korea
    Oh, Jae Young
    Do, Kyung-Hyo
    Jeong, Jae Hong
    Kwak, SuMin
    Choe, Sujin
    An, Dongheui
    Chae, Jong-Chan
    Lee, Kwangjun
    Seo, Kwang-Won
    JOURNAL OF VETERINARY SCIENCE, 2025, 26 (01)
  • [4] Whole genome sequencing analysis of enteropathogenic Escherichia coli from human and companion animals in Korea
    Oh, Jae Young
    Do, Kyung-Hyo
    Jeong, Jae Hong
    Kwak, Sumin
    Choe, Sujin
    An, Dongheui
    Chae, Jong-Chan
    Lee, Kwangjun
    Seo, Kwang-Won
    JOURNAL OF VETERINARY SCIENCE, 2024,
  • [5] Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers
    Kwon, Taesoo
    Bak, Young-Seok
    Jung, Young-Hee
    Yu, Young-Bin
    Choi, Jong Tae
    Kim, Cheorl-Ho
    Kim, Jung-Beom
    Kim, Won
    Cho, Seung-Hak
    GUT PATHOGENS, 2016, 8 : 1 - 8
  • [6] Whole-genome sequencing in the prediction of antimicrobial resistance
    Chan, Kok-Gan
    EXPERT REVIEW OF ANTI-INFECTIVE THERAPY, 2016, 14 (07) : 617 - 619
  • [7] Within-farm dynamics of ESBL-producing Escherichia coli in dairy cattle: Resistance profiles and molecular characterization by long-read whole-genome sequencing
    Tello, Maitane
    Ocejo, Medelin
    Oporto, Beatriz
    Lavin, Jose Luis
    Hurtado, Ana
    FRONTIERS IN MICROBIOLOGY, 2022, 13
  • [8] Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing
    Ferdous, Mithila
    Zhou, Kai
    Mellmann, Alexander
    Morabito, Stefano
    Croughs, Peter D.
    de Boer, Richard F.
    Kooistra-Smid, Anna M. D.
    Rossen, John W. A.
    Friedrich, Alexander W.
    JOURNAL OF CLINICAL MICROBIOLOGY, 2015, 53 (11) : 3530 - 3538
  • [9] Whole-Genome Analysis of Antimicrobial-Resistant and Extraintestinal Pathogenic Escherichia coli in River Water
    Gomi, Ryota
    Matsuda, Tomonari
    Matsumura, Yasufumi
    Yamamoto, Masaki
    Tanaka, Michio
    Ichiyama, Satoshi
    Yoneda, Minoru
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2017, 83 (05)
  • [10] Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections
    Llarena, Ann-Katrin
    Taboada, Eduardo
    Rossi, Mirko
    JOURNAL OF CLINICAL MICROBIOLOGY, 2017, 55 (05) : 1269 - 1275