Elastic Electron scattering by thermal mixture of glycine conformers in gas phase

被引:0
作者
Ribas, Mylena H. [1 ]
Tennyson, Jonathan [2 ]
Fujimoto, Milton M. [1 ]
机构
[1] Univ Fed Parana, Dept Fis, BR-81531990 Curitiba, PR, Brazil
[2] UCL, Dept Phys & Astron, Gower St, London WC1E 6BT, England
关键词
elastic; electron; scattering; thermal; mixtures; glycines; LOW-ENERGY-ELECTRON; MILLIMETER WAVE SPECTRUM; AB-INITIO; POTENTIAL-ENERGY; GASEOUS GLYCINE; HARTREE-FOCK; ALANINE; ZWITTERION; MOLECULE; ANION;
D O I
10.1088/1361-6455/aca734
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
A theoretical study of electron scattering by a thermal mixture of glycine molecules in the energy range from 1 to 10 eV is performed using the UK-RMol codes which are based on the R-Matrix method. The six lowest relative Gibbs free energies glycine conformers considered, Ip, IIp, IIn, IIIp, IIIn and IVn, are significantly populated in thermal mixtures. All these conformers present similar resonance structures in the eigenphase sums: a lower-energy resonance state near 1.8 eV and another at higher-energy above 7 eV. For the six conformers the lowest resonance lies between 1.75 eV and 2.21 eV. The very large dipole moments of 6.32 D and 5.67 D for IIp and IIn, respectively, makes the magnitude of their cross sections significantly larger than other conformers, which increases the average cross sections in thermal mixtures compared with the cross sections of the lowest energy Ip conformer. Three conformer population sets are used to calculate the averaged differential and integral cross sections: two theoretical sets based on the relative Gibbs free energies and another set that aims to mimic experiment based on the observed populations. The averaged cross sections are similar for all population sets, but differ from the Ip conformer cross section. This suggests that, for large and flexible molecules, the computed average cross sections should be used when comparing with experimental data.
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页数:12
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共 65 条
[11]   NEGATIVE IONS OF POLAR MOLECULES [J].
CRAWFORD, OH .
MOLECULAR PHYSICS, 1971, 20 (04) :585-&
[12]   ON THE STRUCTURES OF FREE GLYCINE AND ALPHA-ALANINE [J].
CSASZAR, AG .
JOURNAL OF MOLECULAR STRUCTURE, 1995, 346 :141-152
[13]   CONFORMERS OF GASEOUS GLYCINE [J].
CSASZAR, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (24) :9568-9575
[14]   Preparation and photoelectron spectrum of the glycine molecular anion: Assignment to a dipole-bound electron species with a high-dipole moment, non-zwitterionic form of the neutral core [J].
Diken, EG ;
Hammer, NI ;
Johnson, MA .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (21) :9899-9902
[15]   THE GLYCINE ZWITTERION DOES NOT EXIST IN THE GAS-PHASE - RESULTS FROM A DETAILED ABINITIO ELECTRONIC-STRUCTURE STUDY [J].
DING, YB ;
KROGHJESPERSEN, K .
CHEMICAL PHYSICS LETTERS, 1992, 199 (3-4) :261-266
[16]   Low-energy electron collisions with glycine [J].
dos Santos, Josue S. ;
da Costa, Romarly F. ;
Varella, Marcio T. do N. .
JOURNAL OF CHEMICAL PHYSICS, 2012, 136 (08)
[17]   RECENT COMPUTATIONAL DEVELOPMENTS WITH THE SELF-CONSISTENT ELECTRON PAIRS METHOD AND APPLICATION TO THE STABILITY OF GLYCINE CONFORMERS [J].
DYKSTRA, CE ;
CHILES, RA ;
GARRETT, MD .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1981, 2 (03) :266-272
[18]   Understanding glycine conformation through molecular orbitals [J].
Falzon, CT ;
Wang, F .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (21)
[19]   IMPORTANCE OF CORRELATION-GRADIENT GEOMETRY OPTIMIZATION FOR MOLECULAR CONFORMATIONAL-ANALYSES [J].
FREY, RF ;
COFFIN, J ;
NEWTON, SQ ;
RAMEK, M ;
CHENG, VKW ;
MOMANY, FA ;
SCHAFER, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1992, 114 (13) :5369-5377
[20]   Averaged electron collision cross sections for thermal mixtures of β-alanine conformers in the gas phase [J].
Fujimoto, Milton M. ;
de Lima, Erik V. R. ;
Tennyson, Jonathan .
JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS, 2017, 50 (19)