Elastic Electron scattering by thermal mixture of glycine conformers in gas phase

被引:0
作者
Ribas, Mylena H. [1 ]
Tennyson, Jonathan [2 ]
Fujimoto, Milton M. [1 ]
机构
[1] Univ Fed Parana, Dept Fis, BR-81531990 Curitiba, PR, Brazil
[2] UCL, Dept Phys & Astron, Gower St, London WC1E 6BT, England
关键词
elastic; electron; scattering; thermal; mixtures; glycines; LOW-ENERGY-ELECTRON; MILLIMETER WAVE SPECTRUM; AB-INITIO; POTENTIAL-ENERGY; GASEOUS GLYCINE; HARTREE-FOCK; ALANINE; ZWITTERION; MOLECULE; ANION;
D O I
10.1088/1361-6455/aca734
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
A theoretical study of electron scattering by a thermal mixture of glycine molecules in the energy range from 1 to 10 eV is performed using the UK-RMol codes which are based on the R-Matrix method. The six lowest relative Gibbs free energies glycine conformers considered, Ip, IIp, IIn, IIIp, IIIn and IVn, are significantly populated in thermal mixtures. All these conformers present similar resonance structures in the eigenphase sums: a lower-energy resonance state near 1.8 eV and another at higher-energy above 7 eV. For the six conformers the lowest resonance lies between 1.75 eV and 2.21 eV. The very large dipole moments of 6.32 D and 5.67 D for IIp and IIn, respectively, makes the magnitude of their cross sections significantly larger than other conformers, which increases the average cross sections in thermal mixtures compared with the cross sections of the lowest energy Ip conformer. Three conformer population sets are used to calculate the averaged differential and integral cross sections: two theoretical sets based on the relative Gibbs free energies and another set that aims to mimic experiment based on the observed populations. The averaged cross sections are similar for all population sets, but differ from the Ip conformer cross section. This suggests that, for large and flexible molecules, the computed average cross sections should be used when comparing with experimental data.
引用
收藏
页数:12
相关论文
共 65 条
[1]   Low energy electron impact in gas phase glycine, alanine and propanoic acid: Electronic, vibrational excitations and negative ions [J].
Abouaf, R. .
CHEMICAL PHYSICS LETTERS, 2008, 451 (1-3) :25-30
[2]   Temporary anion states of selected amino acids [J].
Aflatooni, K ;
Hitt, B ;
Gallup, GA ;
Burrow, FD .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (14) :6489-6494
[3]   The crystal structure of glycine [J].
Albrecht, G ;
Corey, RB .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1939, 61 :1087-1103
[4]   Study of resonances in formic acid by means of vibrational excitation by slow electrons [J].
Allan, Michael .
JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS, 2006, 39 (14) :2939-2947
[5]   Conformational equilibrium in glycine: Focal-point analysis and ab initio limit [J].
Balabin, Roman M. .
CHEMICAL PHYSICS LETTERS, 2009, 479 (4-6) :195-200
[6]   CONFORMATIONAL BEHAVIOR OF GASEOUS GLYCINE BY A DENSITY-FUNCTIONAL APPROACH [J].
BARONE, V ;
ADAMO, C ;
LELJ, F .
JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (01) :364-370
[7]   MacMolPlt: A graphical user interface for GAMESS [J].
Bode, BM ;
Gordon, MS .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1998, 16 (03) :133-+
[8]  
Boudaïffa B, 2000, SCIENCE, V287, P1658, DOI 10.1126/science.287.5458.1658
[9]   MICROWAVE-SPECTRUM AND CONFORMATION OF GLYCINE [J].
BROWN, RD ;
GODFREY, PD ;
STOREY, JWV ;
BASSEZ, MP .
JOURNAL OF THE CHEMICAL SOCIETY-CHEMICAL COMMUNICATIONS, 1978, (13) :547-548
[10]   UKRmol: a low-energy electron- and positron-molecule scattering suite [J].
Carr, J. M. ;
Galiatsatos, P. G. ;
Gorfinkiel, J. D. ;
Harvey, A. G. ;
Lysaght, M. A. ;
Madden, D. ;
Masin, Z. ;
Plummer, M. ;
Tennyson, J. ;
Varambhia, H. N. .
EUROPEAN PHYSICAL JOURNAL D, 2012, 66 (03)