Experimental Spectroscopic, Computational, Hirshfeld Surface, Molecular Docking Investigations on 1H-Indole-3-Carbaldehyde

被引:31
作者
Fatima, Aysha [1 ,2 ]
Khanum, Ghazala [1 ]
Sharma, Arun [1 ]
Verma, Indresh [3 ]
Arora, Himanshu [4 ]
Siddiqui, Nazia [5 ]
Javed, Saleem [2 ]
机构
[1] Jiwaji Univ, SOS Chem, Gwalior, Madhya Pradesh, India
[2] Dr Bhimrao Ambedkar Univ, Dept Chem, Agra 282002, Uttar Pradesh, India
[3] Indian Inst Technol, Dept Chem, Kanpur, Uttar Pradesh, India
[4] GD Goenka Univ, Sch Engn & Sci, Dept Basic & Appl Sci, Gurugram, Haryana, India
[5] Dayalbagh Educ Inst Agra, USIC, Agra 282005, Uttar Pradesh, India
关键词
Optimization; vibrational analysis; hirshfeld surface; MEP; ELF; docking; EXPERIMENTAL FT-IR; ANTICANCER AGENTS; INDOLE; SCAFFOLD; RAMAN; NMR; DFT; NBO; DERIVATIVES; INHIBITORS;
D O I
10.1080/10406638.2022.2026989
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
1H-Indole-3-carbaldehyde (1H-I3A) was investigated experimentally by NMR (1H-NMR and 13 C-NMR in solution form), FT-Raman, FT-IR, UV-Visible and quantum chemically by DFT approach. 3 D and 2 D surface analysis was carried by Hirshfeld surface analysis. The B3LYP method and the 6-311++G(d,p) basis set were used to optimize the molecular structure and vibrational modes. Optimized binding parameters and experimental binding parameters are in good agreement. VEDA (Vibrational Energy Distribution analysis) successfully carried out and complete tasks for the distribution of potential energy. 1H-NMR and 13 C-NMR shifts were estimated with GIAO method and the results compared with experimental spectra. The TDDFT method and the PCM solvent model were used for the analysis of electronic properties such as UV-Vis (in the gas phase, methanol and DMSO) and compared with the experimental UV-Vis spectra. The HOMO/LUMO energy results underscore that sufficient charge transfer has taken place within the molecule. Studies of donor-acceptor connections were performed using NBO analysis. The MEP surface analysis was performed and charge distribution was demonstrated. The degree of relative localization of electrons was analyzed using the FLF diagram. The Fukui functional analysis to find possible points of attack for various substituents. Molecular electrostatic potential (MEP) was created and 3-D color representation shows reactive sites. Study of donor-acceptor interconnections were done via NBO analysis. The biological study like molecular docking was done with 7 different receptors to find the best ligand-protein interactions and drug similarities.
引用
收藏
页码:1263 / 1287
页数:25
相关论文
共 67 条
[1]   DFT, molecular docking and experimental FT-IR, FT-Raman, NMR inquisitions on "4-chloro-N-(4,5-dihydro-1H-imidazol-2-yl)-6-methoxy-2-methylpyrimidin-5-amine": Alpha-2-imidazoline receptor agonist antihypertensive agent [J].
Aayisha, S. ;
Devi, T. S. Renuga ;
Janani, S. ;
Muthu, S. ;
Raja, M. ;
Sevvanthi, S. .
JOURNAL OF MOLECULAR STRUCTURE, 2019, 1186 :468-481
[2]   Synthesis, spectroscopic studies and DFT/TD-DFT/PCM calculations of molecular structure, spectroscopic characterization and NBO of charge transfer complex between 5-amino-1,3-dimethylpyrazole (5-ADMP) with chloranilic acid (CLA) in different solvents [J].
Al-Ahmary, Khairia M. ;
Habeeb, Moustafa M. ;
Aljandali, Safaa H. .
JOURNAL OF MOLECULAR LIQUIDS, 2019, 277 :453-470
[3]  
[Anonymous], Origin 8.0
[4]  
[Anonymous], 2009, MOSBYS MED DICT
[5]  
[Anonymous], 2000, Calculations from Statistical Thermodynamics
[6]   Spectroscopic and quantum/classical mechanics based computational studies to compare the ability of Andrographolide and its derivative to inhibit Nitric Oxide Synthase [J].
Ben Geoffrey, A. S. ;
Prasana, Johanan Christian ;
Muthu, S. ;
Abraham, Christina Susan ;
David, Host Antony .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2019, 218 :374-387
[7]   ISOLATION AND IDENTIFICATION OF INDOLE-3-CARBOXALDEHYDE - MAJOR NEW URINARY METABOLITE OF D-TRYPTOPHAN [J].
CHEN, NC ;
GHOLSON, RK ;
RAICA, N .
BIOCHIMICA ET BIOPHYSICA ACTA, 1974, 343 (01) :167-172
[8]   Indole in the target-based design of anticancer agents: A versatile scaffold with diverse mechanisms [J].
Dadashpour, Sakineh ;
Emami, Saeed .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2018, 150 :9-29
[9]   SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules [J].
Daina, Antoine ;
Michielin, Olivier ;
Zoete, Vincent .
SCIENTIFIC REPORTS, 2017, 7
[10]   From Nature to Drug Discovery: The Indole Scaffold as a 'Privileged Structure' [J].
de Sa Alves, Fernando Rodrigues ;
Barreiro, Eliezer J. ;
Manssour Fraga, Carlos Alberto .
MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2009, 9 (07) :782-793