Machine-Learning-based Size Estimation of Marine Particles in Holograms Recorded by a Submersible Digital Holographic Camera

被引:0
作者
Liu, Zonghua [1 ]
Giering, Sarah [1 ]
Thevar, Thangavel [2 ]
Burns, Nick [3 ]
Ockwell, Mike [3 ]
Watson, John [2 ]
机构
[1] Natl Oceanog Ctr, Southampton, Hants, England
[2] Univ Aberdeen, Sch Engn, Aberdeen, Scotland
[3] Hi Z 3D LTD, London, England
来源
OCEANS 2023 - LIMERICK | 2023年
基金
英国自然环境研究理事会; 欧洲研究理事会;
关键词
subsea digital holography; size estimation; particle size distributions; hologram processing; machine learning;
D O I
10.1109/OCEANSLimerick52467.2023.10244456
中图分类号
U6 [水路运输]; P75 [海洋工程];
学科分类号
0814 ; 081505 ; 0824 ; 082401 ;
摘要
Particle size estimation is key to understanding carbon fluxes and storage in the marine ecosystem. Images of particles provide much information about their size. A subsea digital holographic camera was used to image particles in vertical trajectory in South Georgia. The holograms were processed using a rapid hologram processing suite that extracted focused particle vignettes from these raw holograms. A machine-learning-based method has been developed to analyse the particle size information from these vignettes. To be specific, a structured-forest-based model trained on a group of synthetic holographic particle images is used to detect the particle edges in these vignettes. Following that, a set of pixel-wise morphology operators are used to extract particle regions (masks) from their edge images. Lastly, the size information of the recorded particles can be calculated based on these mask images. The proposed method has been evaluated on a group of synthetic holograms and real holograms, compared with the other ten methods, including four edge-based methods, four region-based methods, a thresholding-based method, and a Kmeans-based method. The results show that our method has the best performance regarding accuracy and processing time. It reaches similar to 0.7 of mean IoU and similar to 25 s of running time on the 1,000 test vignettes. In terms of qualitative analysis, the regions of the given examples extracted by the proposed method closely match the real particle regions. We also use this method to analyse the size distributions of two profiles, and some generic results are given in this paper.
引用
收藏
页数:8
相关论文
共 31 条
  • [1] Aditya N., 2021, Front. Mar. Sci., V7
  • [2] Boltz S., "Image segmentation using statistical region merging", MATLAB Central File Exchange
  • [3] Robust particle outline extraction and its application to digital in-line holograms of marine organisms
    Burns, Nicholas M.
    Watson, John
    [J]. OPTICAL ENGINEERING, 2014, 53 (11)
  • [4] comm- tec, LISST-HOLO User's Guide, P11
  • [5] Fast Edge Detection Using Structured Forests
    Dollar, Piotr
    Zitnick, C. Lawrence
    [J]. IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2015, 37 (08) : 1558 - 1570
  • [6] Eddins S., MATLAB Central Blogs
  • [7] Are plankton nets a thing of the past? An assessment of in situ imaging of zooplankton for large-scale ecosystem assessment and policy decision-making
    Giering, Sarah L. C.
    Culverhouse, Phil F.
    Johns, David G.
    McQuatters-Gollop, Abigail
    Pitois, Sophie G.
    [J]. FRONTIERS IN MARINE SCIENCE, 2022, 9
  • [8] The Interpretation of Particle Size, Shape, and Carbon Flux of Marine Particle Images Is Strongly Affected by the Choice of Particle Detection Algorithm
    Giering, Sarah L. C.
    Hosking, Brett
    Briggs, Nathan
    Iversen, Morten H.
    [J]. FRONTIERS IN MARINE SCIENCE, 2020, 7
  • [9] Seasonal variation of zooplankton community structure and trophic position in the Celtic Sea: A stable isotope and biovolume spectrum approach
    Giering, Sarah L. C.
    Wells, Seona R.
    Mayers, Kyle M. J.
    Schuster, Hanna
    Cornwell, Louise
    Fileman, Elaine S.
    Atkinson, Angus
    Cook, Kathryn B.
    Preece, Calum
    Mayor, Daniel J.
    [J]. PROGRESS IN OCEANOGRAPHY, 2019, 177
  • [10] Sinking Organic Particles in the Ocean-Flux Estimates From in situ Optical Devices
    Giering, Sarah Lou Carolin
    Cavan, Emma Louise
    Basedow, Sunnje Linnea
    Briggs, Nathan
    Burd, Adrian B.
    Darroch, Louise J.
    Guidi, Lionel
    Irisson, Jean-Olivier
    Iversen, Morten H.
    Kiko, Rainer
    Lindsay, Dhugal
    Marcolin, Catarina R.
    McDonnell, Andrew M. P.
    Moeller, Klas Ove
    Passow, Uta
    Thomalla, Sandy
    Trull, Thomas William
    Waite, Anya M.
    [J]. FRONTIERS IN MARINE SCIENCE, 2020, 6