Mass Spectrometry for Assessing Protein-Nucleic Acid Interactions

被引:4
作者
He, Xiaomei [1 ]
Chen, Xingyuan [2 ]
Wang, Yinsheng [1 ,2 ]
机构
[1] Univ Calif Riverside, Dept Chem, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Environm Toxicol Grad Program, Riverside, CA 92521 USA
基金
美国国家卫生研究院;
关键词
RNA-BINDING PROTEINS; CROSS-LINKING; MESSENGER-RNAS; R-LOOPS; DNA; IDENTIFICATION; PREDICTION; REVEALS; QUANTIFICATION; SPECIFICITY;
D O I
10.1021/acs.analchem.2c04353
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:115 / 127
页数:13
相关论文
共 50 条
  • [21] Protein-protein and protein-nucleic acid binding residues important for common and rare sequence variants in human
    Qiu, Jiajun
    Nechaev, Dmitrii
    Rost, Burkhard
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [22] Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics
    Kriel, Nastassja L.
    Heunis, Tiaan
    Sampson, Samantha L.
    van Pittius, Nico C.
    Williams, Monique J.
    Warren, Robin M.
    BMC MOLECULAR AND CELL BIOLOGY, 2020, 21 (01)
  • [23] Quaternary Diamines as Mass Spectrometry Cleavable Crosslinkers for Protein Interactions
    Clifford-Nunn, Billy
    Showalter, H. D. Hollis
    Andrews, Philip C.
    JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2012, 23 (02) : 201 - 212
  • [24] Mapping protein-protein interactions by mass spectrometry
    Liu, Xiaonan
    Abad, Lawrence
    Chatterjee, Lopamudra
    Cristea, Ileana M.
    Varjosalo, Markku
    MASS SPECTROMETRY REVIEWS, 2024,
  • [25] Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes
    Gromiha, M. Michael
    Saranya, N.
    Selvaraj, S.
    Jayaram, B.
    Fukui, Kazuhiko
    PROTEOME SCIENCE, 2011, 9
  • [26] iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots
    Zhu, Xiaolei
    Liu, Ling
    He, Jingjing
    Fang, Ting
    Xiong, Yi
    Mitchell, Julie C.
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [27] Structure-based prediction of protein-nucleic acid binding using graph neural networks
    Sagendorf, Jared M.
    Mitra, Raktim
    Huang, Jiawei
    Chen, Xiaojiang S.
    Rohs, Remo
    BIOPHYSICAL REVIEWS, 2024, 16 (03) : 297 - 314
  • [28] Combining the Power of Advanced Proteome-wide Sample Preparation Methods and Mass Spectrometry for defining the RNA-Protein Interactions
    Liu, Tong
    Xia, Chaoshuang
    Li, Xianyu
    Yang, Hongjun
    MASS SPECTROMETRY LETTERS, 2022, 13 (04) : 115 - 124
  • [29] Nucleic acid constructs for the interrogation of multivalent protein interactions
    Yeldell, Sean B.
    Seitz, Oliver
    CHEMICAL SOCIETY REVIEWS, 2020, 49 (19) : 6848 - 6865
  • [30] Analyzing protein-protein interactions by quantitative mass spectrometry
    Paul, Florian E.
    Hosp, Fabian
    Selbach, Matthias
    METHODS, 2011, 54 (04) : 387 - 395