Transcriptomic diversity of cell types across the adult human brain

被引:231
作者
Siletti, Kimberly [1 ,4 ]
Hodge, Rebecca [2 ]
Albiach, Alejandro Mossi [1 ]
Lee, Ka Wai [1 ]
Ding, Song-Lin [2 ]
Hu, Lijuan [1 ]
Lonnerberg, Peter [1 ]
Bakken, Trygve [2 ]
Casper, Tamara [2 ]
Clark, Michael [2 ]
Dee, Nick [2 ]
Gloe, Jessica [2 ]
Hirschstein, Daniel [2 ]
Shapovalova, Nadiya V. [2 ]
Keene, C. Dirk [3 ]
Nyhus, Julie [2 ]
Tung, Herman [2 ]
Yanny, Anna Marie [2 ]
Arenas, Ernest [1 ]
Lein, Ed S. [2 ]
Linnarsson, Sten [1 ]
机构
[1] Karolinska Inst, S-17177 Stockholm, Sweden
[2] Allen Inst Brain Sci, Seattle, WA 98109 USA
[3] Univ Washington, Dept Lab Med & Pathol, Seattle, WA 98195 USA
[4] Univ Med Ctr Utrecht, NL-3584 CG Utrecht, Netherlands
基金
欧盟地平线“2020”;
关键词
NEURONS;
D O I
10.1126/science.add7046
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
引用
收藏
页码:175 / +
页数:12
相关论文
共 35 条
[1]  
Allen Institute for Brain Science, 2020, Human Post Mortem Brain Processing, DOI [10.17504/protocols.io.bf4ajqse, DOI 10.17504/PROTOCOLS.IO.BF4AJQSE]
[2]   Comparative cellular analysis of motor cortex in human, marmoset and mouse [J].
Bakken, Trygve E. ;
Jorstad, Nikolas L. ;
Hu, Qiwen ;
Lake, Blue B. ;
Tian, Wei ;
Kalmbach, Brian E. ;
Crow, Megan ;
Hodge, Rebecca D. ;
Krienen, Fenna M. ;
Sorensen, Staci A. ;
Eggermont, Jeroen ;
Yao, Zizhen ;
Aevermann, Brian D. ;
Aldridge, Andrew I. ;
Bartlett, Anna ;
Bertagnolli, Darren ;
Casper, Tamara ;
Castanon, Rosa G. ;
Crichton, Kirsten ;
Daigle, Tanya L. ;
Dalley, Rachel ;
Dee, Nick ;
Dembrow, Nikolai ;
Diep, Dinh ;
Ding, Song-Lin ;
Dong, Weixiu ;
Fang, Rongxin ;
Fischer, Stephan ;
Goldman, Melissa ;
Goldy, Jeff ;
Graybuck, Lucas T. ;
Herb, Brian R. ;
Hou, Xiaomeng ;
Kancherla, Jayaram ;
Kroll, Matthew ;
Lathia, Kanan ;
van Lew, Baldur ;
Li, Yang Eric ;
Liu, Christine S. ;
Liu, Hanqing ;
Lucero, Jacinta D. ;
Mahurkar, Anup ;
McMillen, Delissa ;
Miller, Jeremy A. ;
Moussa, Marmar ;
Nery, Joseph R. ;
Nicovich, Philip R. ;
Niu, Sheng-Yong ;
Orvis, Joshua ;
Osteen, Julia K. .
NATURE, 2021, 598 (7879) :111-+
[3]   Latent Dirichlet allocation [J].
Blei, DM ;
Ng, AY ;
Jordan, MI .
JOURNAL OF MACHINE LEARNING RESEARCH, 2003, 3 (4-5) :993-1022
[4]  
Bonald T, 2018, Arxiv, DOI [arXiv:1806.01664, 10.48550/arXiv.1806.01664, DOI 10.48550/ARXIV.1806.01664]
[5]   Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH [J].
Borm, Lars E. ;
Albiach, Alejandro Mossi ;
Mannens, Camiel C. A. ;
Janusauskas, Jokubas ;
Ozgun, Ceren ;
Fernandez-Garcia, David ;
Hodge, Rebecca ;
Castillo, Francisca ;
Hedin, Charlotte R. H. ;
Villablanca, Eduardo J. ;
Uhlen, Per ;
Lein, Ed S. ;
Codeluppi, Simone ;
Linnarsson, Sten .
NATURE BIOTECHNOLOGY, 2023, 41 (02) :222-+
[6]   Reactive astrocyte nomenclature, definitions, and future directions [J].
Escartin, Carole ;
Galea, Elena ;
Lakatos, Andras ;
O'Callaghan, James P. ;
Petzold, Gabor C. ;
Serrano-Pozo, Alberto ;
Steinhauser, Christian ;
Volterra, Andrea ;
Carmignoto, Giorgio ;
Agarwal, Amit ;
Allen, Nicola J. ;
Araque, Alfonso ;
Barbeito, Luis ;
Barzilai, Ari ;
Bergles, Dwight E. ;
Bonvento, Gilles ;
Butt, Arthur M. ;
Chen, Wei-Ting ;
Cohen-Salmon, Martine ;
Cunningham, Colm ;
Deneen, Benjamin ;
De Strooper, Bart ;
Diaz-Castro, Blanca ;
Farina, Cinthia ;
Freeman, Marc ;
Gallo, Vittorio ;
Goldman, James E. ;
Goldman, Steven A. ;
Gotz, Magdalena ;
Gutierrez, Antonia ;
Haydon, Philip G. ;
Heiland, Dieter H. ;
Hol, Elly M. ;
Holt, Matthew G. ;
Iino, Masamitsu ;
Kastanenka, Ksenia V. ;
Kettenmann, Helmut ;
Khakh, Baljit S. ;
Koizumi, Schuichi ;
Lee, C. Justin ;
Liddelow, Shane A. ;
MacVicar, Brian A. ;
Magistretti, Pierre ;
Messing, Albee ;
Mishra, Anusha ;
Molofsky, Anna V. ;
Murai, Keith K. ;
Norris, Christopher M. ;
Okada, Seiji ;
Oliet, Stephane H. R. .
NATURE NEUROSCIENCE, 2021, 24 (03) :312-325
[7]   Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing [J].
Farouni, Rick ;
Djambazian, Haig ;
Ferri, Lorenzo E. ;
Ragoussis, Jiannis ;
Najafabadi, Hamed S. .
NATURE COMMUNICATIONS, 2020, 11 (01)
[8]   Conserved cell types with divergent features in human versus mouse cortex [J].
Hodge, Rebecca D. ;
Bakken, Trygve E. ;
Miller, Jeremy A. ;
Smith, Kimberly A. ;
Barkan, Eliza R. ;
Graybuck, Lucas T. ;
Close, Jennie L. ;
Long, Brian ;
Johansen, Nelson ;
Penn, Osnat ;
Yao, Zizhen ;
Eggermont, Jeroen ;
Hollt, Thomas ;
Levi, Boaz P. ;
Shehata, Soraya I. ;
Aevermann, Brian ;
Beller, Allison ;
Bertagnolli, Darren ;
Brouner, Krissy ;
Casper, Tamara ;
Cobbs, Charles ;
Dalley, Rachel ;
Dee, Nick ;
Ding, Song-Lin ;
Ellenbogen, Richard G. ;
Fong, Olivia ;
Garren, Emma ;
Goldy, Jeff ;
Gwinn, Ryder P. ;
Hirschstein, Daniel ;
Keene, C. Dirk ;
Keshk, Mohamed ;
Ko, Andrew L. ;
Lathia, Kanan ;
Mahfouz, Ahmed ;
Maltzer, Zoe ;
McGraw, Medea ;
Thuc Nghi Nguyen ;
Nyhus, Julie ;
Ojemann, Jeffrey G. ;
Oldre, Aaron ;
Parry, Sheana ;
Reynolds, Shannon ;
Rimorin, Christine ;
Shapovalova, Nadiya V. ;
Somasundaram, Saroja ;
Szafer, Aaron ;
Thomsen, Elliot R. ;
Tieu, Michael ;
Quon, Gerald .
NATURE, 2019, 573 (7772) :61-+
[9]   Tectal-derived interneurons contribute to phasic and tonic inhibition in the visual thalamus [J].
Jager, Polona ;
Ye, Zhiwen ;
Yu, Xiao ;
Zagoraiou, Laskaro ;
Prekop, Hong-Ting ;
Partanen, Juha ;
Jessell, Thomas M. ;
Wisden, William ;
Brickley, Stephen G. ;
Delogu, Alessio .
NATURE COMMUNICATIONS, 2016, 7
[10]   Altered human oligodendrocyte heterogeneity in multiple sclerosis [J].
Jakel, Sarah ;
Agirre, Eneritz ;
Falcao, Ana Mendanha ;
Van Bruggen, David ;
Lee, Ka Wai ;
Knuesel, Irene ;
Malhotra, Dheeraj ;
Ffrench-Constant, Charles ;
Williams, Anna ;
Castelo-Branco, Goncalo .
NATURE, 2019, 566 (7745) :543-+