Atomic-level structure determination of amorphous molecular solids by NMR

被引:27
作者
Cordova, Manuel [1 ,2 ]
Moutzouri, Pinelopi [1 ]
Nilsson Lill, Sten O. [3 ]
Cousen, Alexander [4 ]
Kearns, Martin [5 ]
Norberg, Stefan T. [6 ]
Svensk Ankarberg, Anna [6 ]
Mccabe, James [5 ]
Pinon, Arthur C. [7 ]
Schantz, Staffan [6 ]
Emsley, Lyndon [1 ,2 ]
机构
[1] Ecole Polytech Fed Lausanne EPFL, Inst Sci & Ingenierie Chim, CH-1015 Lausanne, Switzerland
[2] Ecole Polytech Fed Lausanne EPFL, Natl Ctr Computat Design & Discovery Novel Mat MAR, Lausanne, Switzerland
[3] AstraZeneca, Data Sci & Modelling Pharmaceut Sci R&D, Gothenburg, Sweden
[4] AstraZeneca, Early Chem Dev Pharmaceut Sci R&D, Macclesfield, England
[5] AstraZeneca, Early Prod Dev & Mfg Pharmaceut Sci R&D, Macclesfield, England
[6] AstraZeneca, Oral Prod Dev Pharmaceut Technol & Dev Operat, Gothenburg, Sweden
[7] Univ Gothenburg, Swedish NMR Ctr, Dept Chem & Mol Biol, S-41390 Gothenburg, Sweden
基金
瑞士国家科学基金会;
关键词
DYNAMIC NUCLEAR-POLARIZATION; CRYSTAL-STRUCTURE PREDICTION; CHEMICAL-SHIFT PREDICTION; TIGHT-BINDING METHOD; X-RAY-DIFFRACTION; STATE NMR; POWDER CRYSTALLOGRAPHY; ELECTRON-DIFFRACTION; DRUG DESIGN; SPECTROSCOPY;
D O I
10.1038/s41467-023-40853-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Structure determination of amorphous materials remains challenging, owing to the disorder inherent to these materials. Nuclear magnetic resonance (NMR) powder crystallography is a powerful method to determine the structure of molecular solids, but disorder leads to a high degree of overlap between measured signals, and prevents the unambiguous identification of a single modeled periodic structure as representative of the whole material. Here, we determine the atomic-level ensemble structure of the amorphous form of the drug AZD4625 by combining solid-state NMR experiments with molecular dynamics (MD) simulations and machine-learned chemical shifts. By considering the combined shifts of all 1H and 13C atomic sites in the molecule, we determine the structure of the amorphous form by identifying an ensemble of local molecular environments that are in agreement with experiment. We then extract and analyze preferred conformations and intermolecular interactions in the amorphous sample in terms of the stabilization of the amorphous form of the drug.
引用
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页数:12
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