Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH

被引:2
|
作者
Wiklander, Mariya Lysenkova [1 ]
Overnas, Elin [1 ]
Lagensjo, Johanna [1 ]
Raine, Amanda [1 ]
Petri, Anna [2 ]
Wiman, Ann-Christin [1 ]
Ramsell, Jon [1 ]
Marincevic-Zuniga, Yanara [1 ]
Gezelius, Henrik [1 ]
Martin, Tom [1 ]
Bunikis, Ignas [2 ]
Ekberg, Sara [1 ]
Erlandsson, Rikard [1 ]
Larsson, Pontus [1 ]
Mosbech, Mai-Britt [2 ]
Haggqvist, Susana [2 ]
Kerje, Susanne Hellstedt [2 ]
Feuk, Lars [2 ]
Ameur, Adam [2 ]
Liljedahl, Ulrika [1 ]
Nordlund, Jessica [1 ]
机构
[1] Uppsala Univ, Dept Med Sci & Sci Life Lab, Box 1432, SE-75144 Uppsala, Sweden
[2] Uppsala Univ, Dept Immunol Genet & Pathol & Sci, Life Lab, Uppsala, Sweden
关键词
Next-generation sequencing; Long-read; Short-read; Multi-omics; Genomics; Transcriptomics; Epigenomics; B-ALL; Cell line; Digital karyotype; ACUTE LYMPHOBLASTIC-LEUKEMIA; CANCER; BIOLOGY;
D O I
10.1186/s13104-023-06537-2
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
ObjectivesThe aim of this data paper is to describe a collection of 33 genomic, transcriptomic and epigenomic sequencing datasets of the B-cell acute lymphoblastic leukemia (ALL) cell line REH. REH is one of the most frequently used cell lines for functional studies of pediatric ALL, and these data provide a multi-faceted characterization of its molecular features. The datasets described herein, generated with short- and long-read sequencing technologies, can both provide insights into the complex aberrant karyotype of REH, and be used as reference datasets for sequencing data quality assessment or for methods development.Data descriptionThis paper describes 33 datasets corresponding to 867 gigabases of raw sequencing data generated from the REH cell line. These datasets include five different approaches for whole genome sequencing (WGS) on four sequencing platforms, two RNA sequencing (RNA-seq) techniques on two different sequencing platforms, DNA methylation sequencing, and single-cell ATAC-sequencing.
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页数:5
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