Revitalizing miRNAs mediated agronomical advantageous traits improvement in rice

被引:5
作者
Chandra, Tilak [1 ]
Jaiswal, Sarika [1 ]
Iquebal, Mir Asif [1 ]
Singh, Rakesh [2 ]
Gautam, R. K. [3 ]
Rai, Anil [1 ]
Kumar, Dinesh [1 ,4 ]
机构
[1] ICAR Indian Agr Stat Res Inst, Div Agr Bioinformat, New Delhi 110012, India
[2] Natl Bur Plant Genet Resources, Div Genom Resources, New Delhi 110012, India
[3] Natl Bur Plant Genet Resources, Div Germplasm Evaluat, New Delhi 110012, India
[4] Cent Univ Haryana, Sch Interdisciplinary & Appl Sci, Dept Biotechnol, Mahendergarh, Haryana, India
关键词
Rice; miRNAs; Yield potential; Stress resilience; Long miRNA; Growth and development; SMALL-INTERFERING RNAS; ARTIFICIAL MICRORNA; PLANT ARCHITECTURE; DOWN-REGULATION; GRAIN-YIELD; EXPRESSION PATTERNS; VIRUS-INFECTION; TARGET GENES; MODULE; RESISTANCE;
D O I
10.1016/j.plaphy.2023.107933
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
One of the key enigmas in conventional and modern crop improvement programmes is how to introduce beneficial traits without any penalty impairment. Rice (Oryza sativa L.), among the essential staple food crops grown and utilized worldwide, needs to improve genotypes in multifaceted ways. With the global view to feed ten billion under the climatic perturbation, only a potent functional master regulator can withstand with hope for the next green revolution and food security. miRNAs are such, miniature, fine tuners for crop improvement and provide a value addition in emerging technologies, namely large-scale genotyping, phenotyping, genome editing, marker-assisted selection, and genomic selection, to make rice production feasible. There has been surplus research output generated since the last decade on miRNAs in rice, however, recent functional knowledge is limited to reaping the benefits for conventional and modern improvements in rice to avoid ambiguity and redundancy in the generated data. Here, we present the latest functional understanding of miRNAs in rice. In addition, their biogenesis, intra-and inter-kingdom signaling and communication, implication of amiRNAs, and consequences upon integration with CRISPR-Cas9. Further, highlights refer to the application of miRNAs for rice agronomical trait improvements, broadly classified into three functional domains. The majority of functionally established miRNAs are responsible for growth and development, followed by biotic and abiotic stresses. Tabular cataloguing reveals and highlights two multifaceted modules that were extensively studied. These belong to miRNA families 156 and 396, orchestrate multifarious aspects of advantageous agronomical traits. Moreover, updated and exhaustive functional aspects of different supplemental miRNA modules that would strengthen rice improvement are also being discussed.
引用
收藏
页数:14
相关论文
共 172 条
[1]   MiRNA fine tuning for crop improvement: using advance computational models and biotechnological tools [J].
Abbas, Asad ;
Shah, Adnan Noor ;
Tanveer, Mohsin ;
Ahmed, Waseem ;
Shah, Anis Ali ;
Fiaz, Sajid ;
Waqas, Muhammad Mohsin ;
Ullah, Sami .
MOLECULAR BIOLOGY REPORTS, 2022, 49 (6) :5437-5450
[2]   Overexpression of miR1861h increases tolerance to salt stress in rice (Oryza sativa L.) [J].
Ai, Bin ;
Chen, Yong ;
Zhao, Minmin ;
Ding, Gumu ;
Xie, Jiankun ;
Zhang, Fantao .
GENETIC RESOURCES AND CROP EVOLUTION, 2021, 68 (01) :87-92
[3]   RIR1 represses plant immunity by interacting with mitochondrial complex I subunit in rice [J].
An, Lin ;
Zhang, Siyuan ;
Guo, Ping ;
Song, Liyang ;
Xie, Chuanmiao ;
Guo, Hongyan ;
Fang, Rongxiang ;
Jia, Yantao .
MOLECULAR PLANT PATHOLOGY, 2022, 23 (01) :92-103
[4]   miR2118-dependent U-rich phasiRNA production in rice anther wall development [J].
Araki, Saori ;
Ngoc Tu Le ;
Koizumi, Koji ;
Villar-Briones, Alejandro ;
Nonomura, Ken-Ichi ;
Endo, Masaki ;
Inoue, Haruhiko ;
Saze, Hidetoshi ;
Komiya, Reina .
NATURE COMMUNICATIONS, 2020, 11 (01)
[5]   MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors [J].
Baldrich, Patricia ;
Campo, Sonia ;
Wu, Ming-Tsung ;
Liu, Tze-Tze ;
Hsing, Yue-le Caroline ;
San Segundo, Blanca .
RNA BIOLOGY, 2015, 12 (08) :847-863
[6]   Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa) [J].
Bian, Hongwu ;
Xie, Yakun ;
Guo, Fu ;
Han, Ning ;
Ma, Shengyun ;
Zeng, Zhanghui ;
Wang, Junhui ;
Yang, Yinong ;
Zhu, Muyuan .
NEW PHYTOLOGIST, 2012, 196 (01) :149-161
[7]   HASTY, the Arabidopsis EXPORTIN5 ortholog, regulates cell-to-cell and vascular microRNA movement [J].
Brioudes, Florian ;
Jay, Florence ;
Sarazin, Alexis ;
Grentzinger, Thomas ;
Devers, Emanuel A. ;
Voinnet, Olivier .
EMBO JOURNAL, 2021, 40 (15)
[8]   Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing [J].
Butardo, Vito M. ;
Fitzgerald, Melissa A. ;
Bird, Anthony R. ;
Gidley, Michael J. ;
Flanagan, Bernadine M. ;
Larroque, Oscar ;
Resurreccion, Adoracion P. ;
Laidlaw, Hunter K. C. ;
Jobling, Stephen A. ;
Morell, Matthew K. ;
Rahman, Sadequr .
JOURNAL OF EXPERIMENTAL BOTANY, 2011, 62 (14) :4927-4941
[9]   A novel Transposable element-derived microRNA participates in plant immunity to rice blast disease [J].
Campo, Sonia ;
Sanchez-Sanuy, Ferran ;
Camargo-Ramirez, Rosany ;
Gomez-Ariza, Jorge ;
Baldrich, Patricia ;
Campos-Soriano, Lidia ;
Soto-Suarez, Mauricio ;
San Segundo, Blanca .
PLANT BIOTECHNOLOGY JOURNAL, 2021, 19 (09) :1798-1811
[10]   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance [J].
Campo, Sonia ;
Peris-Peris, Cristina ;
Sire, Christelle ;
Moreno, Ana Beatriz ;
Donaire, Livia ;
Zytnicki, Matthias ;
Notredame, Cedric ;
Llave, Cesar ;
San Segundo, Blanca .
NEW PHYTOLOGIST, 2013, 199 (01) :212-227