Targeting TBK1 to overcome resistance to cancer immunotherapy

被引:87
作者
Sun, Yi [1 ]
Revach, Or-yam [1 ]
Anderson, Seth [2 ]
Kessler, Emily A. A. [2 ]
Wolfe, Clara H. H. [2 ]
Jenney, Anne [3 ]
Mills, Caitlin E. E. [3 ]
Robitschek, Emily J. J.
Davis, Thomas G. R. [2 ]
Kim, Sarah [2 ]
Fu, Amina [1 ]
Ma, Xiang [1 ]
Gwee, Jia [1 ]
Tiwari, Payal [2 ]
Du, Peter P. P.
Sindurakar, Princy [1 ]
Tian, Jun [1 ]
Mehta, Arnav [1 ,2 ,4 ]
Schneider, Alexis M. M. [2 ,5 ]
Yizhak, Keren [6 ]
Sade-Feldman, Moshe [1 ,2 ]
LaSalle, Thomas [1 ]
Sharova, Tatyana [7 ]
Xie, Hongyan [1 ]
Liu, Shuming [3 ]
Michaud, William A. A. [7 ]
Saad-Beretta, Rodrigo [1 ]
Yates, Kathleen B. B. [1 ,2 ]
Iracheta-Vellve, Arvin [2 ]
Spetz, Johan K. E. [3 ,8 ,9 ]
Qin, Xingping [3 ,8 ,9 ]
Sarosiek, Kristopher A. A. [3 ,8 ,9 ]
Zhang, Gao [10 ,11 ,12 ]
Kim, Jong Wook [13 ,14 ,15 ]
Su, Mack Y. Y. [16 ]
Cicerchia, Angelina M. M. [1 ]
Rasmussen, Martin Q. Q.
Klempner, Samuel J. J.
Juric, Dejan [1 ]
Pai, Sara I. I.
Miller, David M. M.
Giobbie-Hurder, Anita [17 ]
Chen, Jonathan H. H. [1 ,2 ,18 ]
Pelka, Karin [1 ,2 ]
Frederick, Dennie T. T. [1 ]
Stinson, Susanna [19 ]
Ivanova, Elena [4 ]
Aref, Amir R. R.
Paweletz, Cloud P. P.
Barbie, David A. A.
机构
[1] Harvard Med Sch, Massachusetts Gen Hosp Canc Ctr, Massachusetts Gen Hosp, Dept Med, Boston, MA 02115 USA
[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
[3] Harvard Med Sch, Harvard Program Therapeut Sci, Lab Syst Pharmacol, Boston, MA 02115 USA
[4] Dana Farber Canc Inst, Dept Med Oncol, Boston, MA USA
[5] MIT, Dept Biol Engn, Cambridge, MA USA
[6] Technion, Inst Technol, Rappaport Fac Med, Dept Cell Biol & Canc Sci, Haifa, Israel
[7] Harvard Med Sch, Massachusetts Gen Hosp Canc Ctr, Dept Surg, Div Surg Oncol, Boston, MA USA
[8] Harvard Sch Publ Hlth, Mol & Integrat Physiol Sci Program, Boston, MA USA
[9] Harvard Sch Publ Hlth, John B Little Ctr Radiat Sci, Boston, MA USA
[10] Wistar Inst Anat & Biol, Mol & Cellular Oncogenesis Program, Philadelphia, PA USA
[11] Duke Univ, Preston Robert Brain Tumor Ctr T, Dept Neurosurg, Sch Med, Durham, NC USA
[12] Duke Univ, Preston Robert Tisch Brain Tumor Ctr, Dept Pathol, Sch Med, Durham, NC USA
[13] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA USA
[14] Univ Calif San Diego, Ctr Novel Therapeut, La Jolla, CA USA
[15] Univ Calif San Diego, Dept Med, La Jolla, CA USA
[16] Harvard Med Sch, Boston, MA USA
[17] Dana Farber Canc Inst, Dept Data Sci, Div Biostat, Boston, MA USA
[18] Massachusetts Gen Hosp, Dept Pathol, Boston, MA USA
[19] Gilead Sci, Foster City, CA USA
关键词
EXPRESSION; DESIGN; CELLS; CGAS;
D O I
10.1038/s41586-023-05704-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Despite the success of PD-1 blockade in melanoma and other cancers, effective treatment strategies to overcome resistance to cancer immunotherapy are lacking(1,2). Here we identify the innate immune kinase TANK-binding kinase 1 (TBK1)(3) as a candidate immune-evasion gene in a pooled genetic screen(4). Using a suite of genetic and pharmacological tools across multiple experimental model systems, we confirm a role for TBK1 as an immune-evasion gene. Targeting TBK1 enhances responses to PD-1 blockade by decreasing the cytotoxicity threshold to effector cytokines (TNF and IFN gamma). TBK1 inhibition in combination with PD-1 blockade also demonstrated efficacy using patient-derived tumour models, with concordant findings in matched patient-derived organotypic tumour spheroids and matched patient-derived organoids. Tumour cells lacking TBK1 are primed to undergo RIPK- and caspase-dependent cell death in response to TNF and IFN gamma in a JAK-STAT-dependent manner. Taken together, our results demonstrate that targeting TBK1 is an effective strategy to overcome resistance to cancer immunotherapy.
引用
收藏
页码:158 / +
页数:32
相关论文
共 64 条
[1]   3D microfluidic ex vivo culture of organotypic tumor spheroids to model immune checkpoint blockade [J].
Aref, Amir R. ;
Campisi, Marco ;
Ivanova, Elena ;
Portell, Andrew ;
Larios, Dalia ;
Piel, Brandon P. ;
Mathur, Natasha ;
Zhou, Chensheng ;
Coakley, Raven Vlahos ;
Bartels, Alan ;
Bowden, Michaela ;
Herbert, Zach ;
Hill, Sarah ;
Gilhooley, Sean ;
Carter, Jacob ;
Canadas, Israel ;
Thai, Tran C. ;
Kitajima, Shunsuke ;
Chiono, Valeria ;
Paweletz, Cloud P. ;
Barbie, David A. ;
Kamm, Roger D. ;
Jenkins, Russell W. .
LAB ON A CHIP, 2018, 18 (20) :3129-3143
[2]   INTERFERON-GAMMA AND TUMOR-NECROSIS-FACTOR HAVE A ROLE IN TUMOR REGRESSIONS MEDIATED BY MURINE CD8+ TUMOR-INFILTRATING LYMPHOCYTES [J].
BARTH, RJ ;
MULE, JJ ;
SPIESS, PJ ;
ROSENBERG, SA .
JOURNAL OF EXPERIMENTAL MEDICINE, 1991, 173 (03) :647-658
[3]   Tumor Interferon Signaling Regulates a Multigenic Resistance Program to Immune Checkpoint Blockade [J].
Benci, Joseph L. ;
Xu, Bihui ;
Qiu, Yu ;
Wu, Tony J. ;
Dada, Hannah ;
Twyman-Saint Victor, Christina ;
Cucolo, Lisa ;
Lee, David S. M. ;
Pauken, Kristen E. ;
Huang, Alexander C. ;
Gangadhar, Tara C. ;
Amaravadi, Ravi K. ;
Schuchter, Lynn M. ;
Feldman, Michael D. ;
Ishwaran, Hemant ;
Vonderheide, Robert H. ;
Maity, Amit ;
Wherry, E. John ;
Minn, Andy J. .
CELL, 2016, 167 (06) :1540-+
[4]   Easy quantitative assessment of genome editing by sequence trace decomposition [J].
Brinkman, Eva K. ;
Chen, Tao ;
Amendola, Mario ;
van Steensel, Bas .
NUCLEIC ACIDS RESEARCH, 2014, 42 (22)
[5]   Novel cross-talk within the IKK family controls innate immunity [J].
Clark, Kristopher ;
Peggie, Mark ;
Plater, Lorna ;
Sorcek, Ronald J. ;
Young, Erick R. R. ;
Madwed, Jeffrey B. ;
Hough, Joanne ;
McIver, Edward G. ;
Cohen, Philip .
BIOCHEMICAL JOURNAL, 2011, 434 :93-104
[6]   Inference of CRISPR Edits from Sanger Trace Data [J].
Conant, David ;
Hsiau, Tim ;
Rossi, Nicholas ;
Oki, Jennifer ;
Maures, Travis ;
Waite, Kelsey ;
Yang, Joyce ;
Joshi, Sahil ;
Kelso, Reed ;
Holden, Kevin ;
Enzmann, Brittany L. ;
Stoner, Rich .
CRISPR JOURNAL, 2022, 5 (01) :123-130
[7]   Identification and Characterization of Von Hippel-Lindau-Recruiting Proteolysis Targeting Chimeras (PROTACs) of TANK-Binding Kinase 1 [J].
Crew, Andrew P. ;
Raina, Kanak ;
Dong, Hanqing ;
Qian, Yimin ;
Wang, Jing ;
Vigil, Dominico ;
Serebrenik, Yevgeniy V. ;
Hamman, Brian D. ;
Morgan, Alicia ;
Ferraro, Caterina ;
Siu, Kam ;
Neklesa, Taavi K. ;
Winkler, James D. ;
Coleman, Kevin G. ;
Crews, Craig M. .
JOURNAL OF MEDICINAL CHEMISTRY, 2018, 61 (02) :583-598
[8]   Preclinical pharmacokinetics, pharmacodynamics, tissue distribution, and tumor penetration of anti-PD-L1 monoclonal antibody, an immune checkpoint inhibitor [J].
Deng, Rong ;
Bumbaca, Daniela ;
Pastuskovas, Cinthia V. ;
Boswell, C. Andrew ;
West, David ;
Cowan, Kyra J. ;
Chiu, Henry ;
McBride, Jacqueline ;
Johnson, Clarissa ;
Xin, Yan ;
Koeppen, Hartmut ;
Leabman, Maya ;
Iyer, Suhasini .
MABS, 2016, 8 (03) :593-603
[9]   Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9 [J].
Doench, John G. ;
Fusi, Nicolo ;
Sullender, Meagan ;
Hegde, Mudra ;
Vaimberg, Emma W. ;
Donovan, Katherine F. ;
Smith, Ian ;
Tothova, Zuzana ;
Wilen, Craig ;
Orchard, Robert ;
Virgin, Herbert W. ;
Listgarten, Jennifer ;
Root, David E. .
NATURE BIOTECHNOLOGY, 2016, 34 (02) :184-+
[10]   Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation [J].
Doench, John G. ;
Hartenian, Ella ;
Graham, Daniel B. ;
Tothova, Zuzana ;
Hegde, Mudra ;
Smith, Ian ;
Sullender, Meagan ;
Ebert, Benjamin L. ;
Xavier, Ramnik J. ;
Root, David E. .
NATURE BIOTECHNOLOGY, 2014, 32 (12) :1262-U130