The complete mitochondrial genomes of four lagriine species (Coleoptera, Tenebrionidae) and phylogenetic relationships within Tenebrionidae

被引:5
作者
Wei, Zhonghua [1 ]
Shi, Aimin [1 ]
机构
[1] China West Normal Univ, Coll Life Sci, Key Lab Southwest China Wildlife Resources Conserv, Minist Educ, Nanchong, Sichuan, Peoples R China
来源
PEERJ | 2023年 / 11卷
关键词
Darkling beetles; Lagriinae; Mitogenome; Phylogenetic analysis; DNA; PLATFORM;
D O I
10.7717/peerj.15483
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
It is common to use whole mitochondrial genomes to analyze phylogenetic relationships among insects. In this study, seven mitogenomes of Tenebrionidae are newly sequenced and annotated. Among them, four species (Cerogira janthinipennis (Fairmaire, 1886), Luprops yunnanus (Fairmaire, 1887), Anaedus unidentasus Wang & Ren, 2007, and Spinolyprops cribricollis Schawaller, 2012) represent the subfamily Lagriinae. In this subfamily, the mitogenomes of the tribes Goniaderini (A. unidentasus) and Lupropini (L. yunnanus and S. cribricollis) were first reported; they were found to be 15,328-16,437 bp in length and encode 37 typical mitochondrial genes (13 PCGs, 2 rRNAs, 22 tRNAs, and a single noncoding control region). Most protein-coding genes in these mitogenomes have typical ATN start codons and TAR or an incomplete stop codon T-. In these four lagriine species, F, L2, I, and N are the most frequently used amino acids. In the 13 PCGs, the gene atp8 (Pi = 0.978) was the most diverse nucleotide, while cox1 was the most conserved gene with the lowest value (Pi = 0.211). The phylogenetic results suggest that Pimelinae, Lagriinae, Blaptinae, Stenochiinae, and Alleculinae are monophyletic, Diaperinae is paraphyletic, and Tenebrioninae appears polyphyletic. In Lagriinae, the tribe Lupropini appears paraphyletic because Spinolyprops is clustered with Anaedus in Goniaderini. These mitogenomic data provide important molecular data for the phylogeny of Tenebrionidae.
引用
收藏
页数:16
相关论文
共 51 条
  • [1] Reinstatement of Eschatoporiini Blaisdell, 1906, a unique tribe of blind cavernicolous Tenebrionidae from California, with a new species from Napa County (Coleoptera, Tenebrionidae, Lagriinae)
    Aalbu, Rolf L.
    Kanda, Kojun
    Smith, Aaron D.
    [J]. ZOOKEYS, 2017, (688) : 135 - 149
  • [2] Complete mitochondrial genome of Promethis valgipes valgipes (Marseul) (Insecta: Coleoptera: Tenebrionidae)
    Bai, Yu
    Chen, Jun
    Li, Guoyong
    Luo, Jianlin
    Wang, Hui
    Yang, Yang
    Liang, Sheng
    Ouyang, Bocheng
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (02): : 538 - 539
  • [3] Complete mitochondrial genome of the super mealworm Zophobas atratus (Fab.) (Insecta: Coleoptera: Tenebrionidae)
    Bai, Yu
    Wang, Hui
    Li, Guoyong
    Luo, Jianlin
    Liang, Sheng
    Li, Can
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1300 - 1301
  • [4] Complete mitochondrial genome of the dark mealworm Tenebrio obscurus Fabricius (Insecta: Coleoptera: Tenebrionidae)
    Bai, Yu
    Li, Can
    Yang, Min
    Liang, Shen
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 171 - 172
  • [5] Tandem repeats finder: a program to analyze DNA sequences
    Benson, G
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (02) : 573 - 580
  • [6] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [7] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [8] Review of genus-group names in the family Tenebrionidae (Insecta, Coleoptera)
    Bouchard, Patrice
    Bousquet, Yves
    Aalbu, Rolf L.
    Alonso-Zarazaga, Miguel A.
    Merkl, Otto
    Davies, Anthony E.
    [J]. ZOOKEYS, 2021, (1050) : 1 - 633
  • [9] Family-group names in Coleoptera (Insecta)
    Bouchard, Patrice
    Bousquet, Yves
    Davies, Anthony E.
    Alonso-Zarazaga, Miguel A.
    Lawrence, John F.
    Lyal, Chris H. C.
    Newton, Alfred F.
    Reid, Chris A. M.
    Schmitt, Michael
    Slipinski, S. Adam
    Smith, Andrew B. T.
    [J]. ZOOKEYS, 2011, (88) : 1 - 895
  • [10] Integrated phylogenomics and fossil data illuminate the evolution of beetles
    Cai, Chenyang
    Tihelka, Erik
    Giacomelli, Mattia
    Lawrence, John F.
    Kundrata, Robin
    Yamamoto, Shuhei
    Thayer, Margaret K.
    Newton, Alfred F.
    Leschen, Richard A. B.
    Gimmel, Matthew L.
    Lu, Liang
    Engel, Michael S.
    Bouchard, Patrice
    Huang, Diying
    Pisani, Davide
    Donoghue, Philip C. J.
    [J]. ROYAL SOCIETY OPEN SCIENCE, 2022, 9 (03):