Identification of the Key Immune Cells and Genes for the Diagnostics and Therapeutics of Meningioma

被引:4
|
作者
Chen, Jiawei [1 ,2 ,3 ,4 ,5 ]
Hua, Lingyang [1 ,2 ,3 ,4 ,5 ]
Xu, Xiupeng [6 ]
Jiapaer, Zeyidan [7 ]
Deng, Jiaojiao [2 ,3 ,4 ,5 ]
Wang, Daijun [1 ,2 ,3 ,4 ,5 ]
Zhang, Lifeng [1 ,2 ,3 ,4 ,5 ]
Li, Guoping [8 ]
Gong, Ye [1 ,2 ,3 ,4 ,5 ,9 ]
机构
[1] Fudan Univ, Huashan Hosp, Shanghai Med Coll, Dept Neurosurg, Shanghai, Peoples R China
[2] Natl Ctr Neurol Disorders, Shanghai, Peoples R China
[3] Shanghai Key Lab Brain Funct Restorat & Neural Reg, Shanghai, Peoples R China
[4] Fudan Univ, Neurosurg Inst, Shanghai, Peoples R China
[5] Shanghai Clin Med Ctr Neurosurg, Shanghai, Peoples R China
[6] Nanjing Med Univ, Affiliated Hosp 1, Dept Neurosurg, Nanjing, Jiangsu, Peoples R China
[7] Xinjiang Univ, Coll Life Sci & Technol, Xinjiang Key Lab Biol Resources & Genet Engn, Urumqi, Peoples R China
[8] Harvard Med Sch, Massachusetts Gen Hosp, Cardiovasc Res Ctr, Boston, MA USA
[9] Fudan Univ, Huashan Hosp, Shanghai Med Coll, Dept Crit Care Med, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
ADCY1; Differentially expressed genes; Immune cell infiltration; Machine-learning; Meningioma; MODULATORY MOLECULE PD-L1; MAST-CELLS; CYCLASE; EXPRESSION; CANCER; TUMOR; ADCY1; ACTIVATION; BIOMARKERS; LANDSCAPE;
D O I
10.1016/j.wneu.2023.05.090
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
-BACKGROUND: Dysregulation of immune infiltration critically contributes to the tumorigenesis and progression of meningiomas. However, the landscape of immune microenvironment and key genes correlated with immune cell infiltration remains unclear. -METHODS: Four Gene Expression Omnibus data sets were included. CIBERSORT algorithm was utilized to analyze the immune cell infiltration in samples. Wilcoxon test, Random Forest algorithm, and Least Absolute Shrinkage and Selection Operator regression were adopted in identifying significantly different infiltrating immune cells and differentially expressed genes (DEGs). Functional enrichment analysis was performed by Kyoto Encyclopedia of Genes and Genomes and Gene Ontology. The correlation between genes and immune cells was evaluated via Spearman's correlation analysis. Receiver Operator Char-acteristic curve analysis evaluated the markers' diagnostic effectiveness. The mRNA-miRNA and Drug-Gene-Immune cell interaction networks were constructed to identify potential diagnostic and therapeutic targets. -CONCLUSIONS: ADCY1 can be identified as a diagnostic marker; ADCY1, BMX, KCNA5, SLCO4A1, and TTR are po-tential therapeutic targets, and their associations with macrophages, neutrophils, NK cells, and plasma cells might impact the tumorigenesis of meningiomas.
引用
收藏
页码:E501 / E514
页数:14
相关论文
共 50 条
  • [1] Identification of key genes and pathways associated with resting mast cells in meningioma
    Xie, Hui
    Yuan, Ce
    Ding, Xiao-hui
    Li, Jin-jiang
    Li, Zhao-yang
    Lu, Wei-cheng
    BMC CANCER, 2021, 21 (01)
  • [2] Identification of key genes and pathways associated with resting mast cells in meningioma
    Hui Xie
    Ce Yuan
    Xiao-hui Ding
    Jin-jiang Li
    Zhao-yang Li
    Wei-cheng Lu
    BMC Cancer, 21
  • [3] Identification of key genes and pathways in meningioma by bioinformatics analysis
    Dai, Junxi
    Ma, Yanbin
    Chu, Shenghua
    Le, Nanyang
    Cao, Jun
    Wang, Yang
    ONCOLOGY LETTERS, 2018, 15 (06) : 8245 - 8252
  • [4] Identification of key genes and pathways in regulating immune-induced diseases of dendritic cells by bioinformatic analysis
    Zheng, Yang
    Zheng, Xianghui
    Li, Shuang
    Zhang, Hanlu
    Liu, Mingyang
    Yang, Qingyuan
    Zhang, Maomao
    Sun, Yong
    Wu, Jian
    Yu, Bo
    MOLECULAR MEDICINE REPORTS, 2018, 17 (06) : 7585 - 7594
  • [5] Identification of key genes of anti-programmed death ligand 1 for meningioma immunotherapy by bioinformatic analysis
    Zhang, Lijian
    Wang, Luxuan
    Tan, Yanli
    Li, Chunhui
    Fang, Chuan
    MEDICAL ONCOLOGY, 2022, 40 (01)
  • [6] Identification of key biomarkers and signaling pathways and analysis of their association with immune cells in immunoglobulin A nephropathy
    Zhang, Guoxin
    Xue, Lanfen
    Zhang, Shanshan
    Liu, Na
    Yao, Xing
    Fu, Jieqiong
    Nie, Limin
    CENTRAL EUROPEAN JOURNAL OF IMMUNOLOGY, 2022, 47 (03) : 189 - 205
  • [7] Identification of Immune Cells and Key Genes associated with Alzheimer's Disease
    Liu, Chenming
    Zhang, Xi
    Chai, Huazhen
    Xu, Sutong
    Liu, Qiulu
    Luo, Yuping
    Li, Siguang
    INTERNATIONAL JOURNAL OF MEDICAL SCIENCES, 2022, 19 (01): : 112 - 125
  • [8] Identification of the key genes and characterizations of Tumor Immune Microenvironment in Lung Adenocarcinoma (LUAD) and Lung Squamous Cell Carcinoma (LUSC)
    Zhang, Lemeng
    Chen, Jianhua
    Cheng, Tianli
    Yang, Hua
    Li, Haitao
    Pan, Changqie
    JOURNAL OF CANCER, 2020, 11 (17): : 4965 - 4979
  • [9] Identification of Key Genes and Immune Characteristics of SASP in Acute Ischemic Stroke
    Cai, Hanlu
    Zhang, Huixue
    Xin, Guanghao
    Peng, Shanshan
    Xu, Fanfan
    Zhang, Nan
    Li, Yichen
    Zhang, Wei
    Li, Ying
    Ren, Yingjie
    Wang, Yu
    Liu, Zhaojun
    Kong, Xiaotong
    Wang, Lihua
    JOURNAL OF MOLECULAR NEUROSCIENCE, 2025, 75 (01)
  • [10] Identification and validation of key immune-related genes with promising diagnostic and predictive value in systemic sclerosis
    Zhang, Yajie
    Zhu, Mingxin
    Xie, Limin
    Zhang, Haowei
    Deng, Tuo
    LIFE SCIENCES, 2023, 312