Parameter estimation of the structured illumination pattern based on principal component analysis (PCA): PCA-SIM

被引:6
作者
Chen, Xin [1 ,2 ]
Hou, Yiwei [1 ,2 ]
Xi, Peng [1 ,2 ]
机构
[1] Peking Univ, Coll Future Technol, Dept Biomed Engn, Beijing 100871, Peoples R China
[2] Peking Univ, Natl Biomed Imaging Ctr, Beijing 100871, Peoples R China
关键词
PHASE-SHIFT ESTIMATION; MICROSCOPY; LIVE; CELLS;
D O I
10.1038/s41377-022-01043-9
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
Principal component analysis (PCA), a common dimensionality reduction method, is introduced into SIM to identify the frequency vectors and pattern phases of the illumination pattern with precise subpixel accuracy, fast speed, and noise-robustness, which is promising for real-time and long-term live-cell imaging.
引用
收藏
页数:3
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共 20 条
[1]   Strategic and practical guidelines for successful structured illumination microscopy [J].
Demmerle, Justin ;
Innocent, Cassandravictoria ;
North, Alison J. ;
Ball, Graeme ;
Mueller, Marcel ;
Miron, Ezequiel ;
Matsuda, Atsushi ;
Dobbie, Ian M. ;
Markaki, Yolanda ;
Schermelleh, Lothar .
NATURE PROTOCOLS, 2017, 12 (05) :988-1010
[2]   Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination [J].
Gustafsson, Mats G. L. ;
Shao, Lin ;
Carlton, Peter M. ;
Wang, C. J. Rachel ;
Golubovskaya, Inna N. ;
Cande, W. Zacheus ;
Agard, David A. ;
Sedat, John W. .
BIOPHYSICAL JOURNAL, 2008, 94 (12) :4957-4970
[3]   Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy [J].
Gustafsson, MGL .
JOURNAL OF MICROSCOPY, 2000, 198 (02) :82-87
[4]   Structured illumination microscopy of a living cell [J].
Hirvonen, Liisa M. ;
Wicker, Kai ;
Mandula, Ondrej ;
Heintzmann, Rainer .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2009, 38 (06) :807-812
[5]   Fast, long-term, super-resolution imaging with Hessian structured illumination microscopy [J].
Huang, Xiaoshuai ;
Fan, Junchao ;
Li, Liuju ;
Liu, Haosen ;
Wu, Runlong ;
Wu, Yi ;
Wei, Lisi ;
Mao, Heng ;
Lal, Amit ;
Xi, Peng ;
Tang, Liqiang ;
Zhang, Yunfeng ;
Liu, Yanmei ;
Tan, Shan ;
Chen, Liangyi .
NATURE BIOTECHNOLOGY, 2018, 36 (05) :451-+
[6]  
Kner P, 2009, NAT METHODS, V6, P339, DOI [10.1038/NMETH.1324, 10.1038/nmeth.1324]
[7]   Structured Illumination Microscopy Image Reconstruction Algorithm [J].
Lal, Amit ;
Shan, Chunyan ;
Xi, Peng .
IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS, 2016, 22 (04) :50-63
[8]   Structured illumination microscopy using digital micro-mirror device and coherent light source [J].
Li, Meiqi ;
Li, Yaning ;
Liu, Wenhui ;
Lal, Amit ;
Jiang, Shan ;
Jin, Dayong ;
Yang, Houpu ;
Wang, Shu ;
Zhanghao, Karl ;
Xi, Peng .
APPLIED PHYSICS LETTERS, 2020, 116 (23)
[9]   Video-rate multi-color structured illumination microscopy with simultaneous real-time reconstruction [J].
Markwirth, Andreas ;
Lachetta, Mario ;
Moenkemoeller, Viola ;
Heintzmann, Rainer ;
Huebner, Wolfgang ;
Huser, Thomas ;
Mueller, Marcel .
NATURE COMMUNICATIONS, 2019, 10 (1)
[10]   Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ [J].
Mueller, Marcel ;
Moenkemoeller, Viola ;
Hennig, Simon ;
Huebner, Wolfgang ;
Huser, Thomas .
NATURE COMMUNICATIONS, 2016, 7