Identification of quantitative trait loci and development of diagnostic markers for growth habit traits in peanut (Arachis hypogaea L.)

被引:7
作者
Fang, Yuanjin [1 ,2 ]
Zhang, Xinyou [1 ,2 ]
Liu, Hua [2 ]
Wu, Jihua [3 ]
Qi, Feiyan [2 ]
Sun, Ziqi [2 ]
Zheng, Zheng [2 ]
Dong, Wenzhao [2 ]
Huang, Bingyan [2 ]
机构
[1] Nanjing Agr Univ, Coll Agr, Nanjing 210095, Peoples R China
[2] Henan Acad Agr Sci, Henan Inst Crop Mol Breeding, Shennong Lab, Key Lab Oil Crops Huang Huai Hai Planis,Minist Agr, Zhengzhou 450002, Peoples R China
[3] Shangqiu Acad Agr & Forestry, Shangqiu 476002, Peoples R China
基金
国家重点研发计划;
关键词
Peanut; QTL; Growth habit; Molecular markers; Pod number; REGISTRATION; GENOME; QUALITY; GENES; RICE; OIL;
D O I
10.1007/s00122-023-04327-9
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Key messageQTLs for growth habit are identified on Arahy.15 and Arahy.06 in peanut, and diagnostic markers are developed and validated for further use in marker-assisted breeding.Peanut is a unique legume crop because its pods develop and mature underground. The pegs derive from flowers following pollination, then reach the ground and develop into pods in the soil. Pod number per plant is influenced by peanut growth habit (GH) that has been categorized into four types, including erect, bunch, spreading and prostrate. Restricting pod development at the plant base, as would be the case for peanut plants with upright lateral branches, would decrease pod yield. On the other hand, GH characterized by spreading lateral branches on the ground would facilitate pod formation on the nodes, thereby increasing yield potential. We describe herein an investigation into the GH traits of 521 peanut recombinant inbred lines grown in three distinct environments. Quantitative trait loci (QTLs) for GH were identified on linkage group (LG) 15 between 203.1 and 204.2 cM and on LG 16 from 139.1 to 139.3 cM. Analysis of resequencing data in the identified QTL regions revealed that single nucleotide polymorphism (SNP) or insertion and/or deletion (INDEL) at Arahy15.156854742, Arahy15.156931574, Arahy15.156976352 and Arahy06.111973258 may affect the functions of their respective candidate genes, Arahy.QV02Z8, Arahy.509QUQ, Arahy.ATH5WE and Arahy.SC7TJM. These SNPs and INDELs in relation to peanut GH were further developed for KASP genotyping and tested on a panel of 77 peanut accessions with distinct GH features. This study validates four diagnostic markers that may be used to distinguish erect/bunch peanuts from spreading/prostrate peanuts, thereby facilitating marker-assisted selection for GH traits in peanut breeding.
引用
收藏
页数:9
相关论文
共 50 条
[21]   Co-localization of quantitative trait loci for pod and kernel traits and development of molecular marker for kernel weight on chromosome Arahy05 in peanut (Arachis hypogaea L.) [J].
Fang, Yuanjin ;
Liu, Hua ;
Sun, Ziqi ;
Qin, Li ;
Zheng, Zheng ;
Qi, Feiyan ;
Wu, Jihua ;
Dong, Wenzhao ;
Huang, Bingyan ;
Zhang, Xinyou .
THEORETICAL AND APPLIED GENETICS, 2024, 137 (11)
[22]   Genetic dissection of additive and epistatic quantitative trait loci controlling pod number per plant in peanut (Arachis hypogaea L.) [J].
Shengzhong Zhang ;
Xiaohui Hu ;
Feifei Wang ;
Huarong Miao ;
Ye Chu ;
Weiqiang Yang ;
Fenggao Cui ;
Sheng Xu ;
Jintao Guo ;
Haoliang Yu ;
Kefu Zhou ;
Jing Chen .
Euphytica, 2023, 219
[23]   Simultaneously mapping loci related to two plant architecture traits by phenotypic recombination BSA/BSR in peanut (Arachis hypogaea L.) [J].
Yu, Xiaona ;
Li, Yaoyao ;
Cui, Xinyuan ;
Wang, Xianheng ;
Li, Jihua ;
Guo, Rui ;
Yan, Fanzhuang ;
Zhang, Shaojing ;
Zhao, Ruihua ;
Song, Danlei ;
Si, Tong ;
Zou, Xiaoxia ;
Wang, Yuefu ;
Zhang, Xiaojun .
THEORETICAL AND APPLIED GENETICS, 2023, 136 (06)
[24]   Genome-Wide Association Analysis Identified Quantitative Trait Loci (QTLs) Underlying Drought-Related Traits in Cultivated Peanut (Arachis hypogaea L.) [J].
Dang, Phat ;
Patel, Jinesh ;
Sorensen, Ron ;
Lamb, Marshall ;
Chen, Charles Y. .
GENES, 2024, 15 (07)
[25]   Identification of chilling-responsive transcripts in peanut (Arachis hypogaea L.) [J].
Tang, Yue Yi ;
Wang, Chuan Tang ;
Yang, Guan Pin ;
Feng, Tong ;
Gao, Hua Yuan ;
Wang, Xiu Zhen ;
Chi, Xiao Yuan ;
Xu, Ya Long ;
Wu, Qi ;
Chen, Dian Xu .
ELECTRONIC JOURNAL OF BIOTECHNOLOGY, 2011, 14 (05)
[26]   Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.) [J].
Luo, Huaiyong ;
Ren, Xiaoping ;
Li, Zhendong ;
Xu, Zhijun ;
Li, Xinping ;
Huang, Li ;
Zhou, Xiaojing ;
Chen, Yuning ;
Chen, Weigang ;
Lei, Yong ;
Liao, Boshou ;
Pandey, Manish K. ;
Varshney, Rajeev K. ;
Guo, Baozhu ;
Jiang, Xiangguo ;
Liu, Fei ;
Jiang, Huifang .
BMC GENOMICS, 2017, 18
[27]   Identification of two major loci and linked marker for oil content in peanut (Arachis hypogaea L.) [J].
Guo, Jianbin ;
Liu, Nian ;
Li, Weitao ;
Wu, Bei ;
Chen, Haiwen ;
Huang, Li ;
Chen, Weigang ;
Luo, Huaiyong ;
Zhou, Xiaojing ;
Jiang, Huifang .
EUPHYTICA, 2021, 217 (02)
[28]   Identification of miRNA, their targets and miPEPs in peanut (Arachis hypogaea L.) [J].
Ram, Mousam Kumar ;
Mukherjee, Koel ;
Pandey, Dev Mani .
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 83
[29]   Genome-wide association study and development of molecular markers for yield and quality traits in peanut (Arachis hypogaea L.) [J].
Minjie Guo ;
Li Deng ;
Jianzhong Gu ;
Jianli Miao ;
Junhua Yin ;
Yang Li ;
Yuanjin Fang ;
Bingyan Huang ;
Ziqi Sun ;
Feiyan Qi ;
Wenzhao Dong ;
Zhenhua Lu ;
Shaowei Li ;
Junping Hu ;
Xinyou Zhang ;
Li Ren .
BMC Plant Biology, 24
[30]   Genome-wide association study and development of molecular markers for yield and quality traits in peanut (Arachis hypogaea L.) [J].
Guo, Minjie ;
Deng, Li ;
Gu, Jianzhong ;
Miao, Jianli ;
Yin, Junhua ;
Li, Yang ;
Fang, Yuanjin ;
Huang, Bingyan ;
Sun, Ziqi ;
Qi, Feiyan ;
Dong, Wenzhao ;
Lu, Zhenhua ;
Li, Shaowei ;
Hu, Junping ;
Zhang, Xinyou ;
Ren, Li .
BMC PLANT BIOLOGY, 2024, 24 (01)