Multi-Omics and Genome Editing Studies on Plant Cell Walls to Improve Biomass Quality

被引:2
|
作者
Sirangelo, Tiziana Maria [1 ]
Ludlow, Richard Andrew [2 ]
Chenet, Tatiana [3 ]
Pasti, Luisa [3 ]
Spadafora, Natasha Damiana [4 ]
机构
[1] Council Agr Res & Agr Econ Anal, Genom & Bioinformat Dept, CREA, I-26836 Montanaso Lombardo, Italy
[2] Cardiff Univ, Sch Biosci, Sir Martin Evans Bldg,Museum Ave, Cardiff CF10 3AX, Wales
[3] Univ Ferrara, Dept Environm & Prevent Sci, I-44121 Ferrara, Italy
[4] Univ Ferrara, Dept Chem Pharmaceut & Agr Sci, I-44121 Ferrara, Italy
来源
AGRICULTURE-BASEL | 2023年 / 13卷 / 04期
关键词
energy crops; genome editing; genomics; metabolomics; phenomics; proteomics; transcriptomics; WIDE ASSOCIATION; GENE FAMILY; POPULUS; REVEALS; CRISPR/CAS9; POPULATIONS; BIOLOGY; BARLEY; YIELD; QTL;
D O I
10.3390/agriculture13040752
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Biomass is one of the most important sources of renewable energy and plays an important role in reducing our reliance on fossil fuels. Efficient biomass production is essential to obtain large amounts of sustainable energy with minimal environmental cost. However, the biochemical and molecular processes behind the synthesis of the main components of biomass are still not fully understood. This review provides a comprehensive summary of the most relevant studies on cell wall biosynthesis and degradation mechanisms, focusing on the lignocellulosic component, in which the conversion process to fermentable sugars is expensive, due to its recalcitrant nature. A focus is placed on multi-omics research involving genomics, transcriptomics, proteomics, metabolomics, and phenomics, since multi-omics approaches offer a unique opportunity to investigate the biological pathways underlying the genotype traits characterizing cell wall energy crops. Furthermore, our study highlights the advances in genome editing approaches and proposes the modification of the genes that are involved in the complex cell wall structure as a feasible solution to an efficient biomass production. Several key points for future research activities based on these emerging technologies are also discussed, focusing on the combination of multi-omics and gene editing approaches, which offer potential for improved biomass valorization and the development of tangible bioproducts.
引用
收藏
页数:19
相关论文
共 50 条
  • [41] Multi-omics analysis revealed room temperature storage affected the quality of litchi by altering carbohydrate metabolism
    Guo, Xiaomeng
    Luo, Tao
    Han, Dongmei
    Zhu, Difa
    Li, Zuyu
    Wu, Zeyi
    Wu, Zhenxian
    SCIENTIA HORTICULTURAE, 2022, 293
  • [42] Editorial: Advances in crop biomass production based on multi-omics approach
    Li, Yin
    Liu, Weizhen
    Zhang, Xingtan
    Wang, Shouchuang
    Yadegari, Ramin
    Wang, Jianping
    FRONTIERS IN PLANT SCIENCE, 2023, 14
  • [43] Multi-omics strategies and prospects to enhance seed quality and nutritional traits in pigeonpea
    Nisha Singh
    Vandna Rai
    Nagendra Kumar Singh
    The Nucleus, 2020, 63 : 249 - 256
  • [44] ArecaceaeMDB: a comprehensive multi-omics database for Arecaceae breeding and functional genomics studies
    Yang, Zhuang
    Liu, Zhenhuan
    Xu, Hang
    Li, Yufei
    Huang, Sishu
    Cao, Guangping
    Shi, Mengwei
    Zhu, Jinjin
    Zhou, Junjie
    Li, Runze
    Ding, Yuanhao
    Xiao, Yong
    Liu, Xianqing
    Fernie, Alisdair R.
    Luo, Jie
    PLANT BIOTECHNOLOGY JOURNAL, 2023, 21 (01) : 11 - 13
  • [45] Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
    Yu, Xiaole
    Liu, Zhixin
    Sun, Xuwu
    PLANT COMMUNICATIONS, 2023, 4 (03)
  • [46] Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone
    Wilson, Michael H.
    Holman, Tara J.
    Sorensen, Iben
    Cancho-Sanchez, Ester
    Wells, Darren M.
    Swarup, Ranjan
    Knox, J. Paul
    Willats, William G. T.
    Ubeda-Tomas, Susana
    Holdsworth, Michael
    Bennett, Malcolm J.
    Vissenberg, Kris
    Hodgman, T. Charlie
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2015, 3
  • [47] Multi-Omics Driven Assembly and Annotation of the Sandalwood (Santalum album) Genome
    Mahesh, Hirehally Basavarajegowda
    Subba, Pratigya
    Advani, Jayshree
    Shirke, Meghana Deepak
    Loganathan, Ramya Malarini
    Chandana, Shankara Lingu
    Shilpa, Siddappa
    Chatterjee, Oishi
    Pinto, Sneha Maria
    Prasad, Thottethodi Subrahmanya Keshava
    Gowda, Malali
    PLANT PHYSIOLOGY, 2018, 176 (04) : 2772 - 2788
  • [48] Advances in Single-cell Multi-omics Analysis Based on Mass Spectrometry
    Huo, Zhiyuan
    Zhou, Jinping
    Ma, Xiumin
    Zhou, Yan
    Huang, Lin
    CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE, 2024, 45 (11):
  • [49] Prognostic significance of proteomics and multi-omics studies in renal carcinoma
    Raimondo, Francesca
    Pitto, Marina
    EXPERT REVIEW OF PROTEOMICS, 2020, 17 (04) : 323 - 334
  • [50] Multi-omics analyses reveal new insights into nutritional quality changes of alfalfa leaves during the flowering period
    Liu, Yinghao
    Fan, Wenqiang
    Cheng, Qiming
    Zhang, Lianyi
    Cai, Ting
    Shi, Quan
    Wang, Zuo
    Chang, Chun
    Yin, Qiang
    Jiang, Xiaowei
    Jin, Ke
    FRONTIERS IN PLANT SCIENCE, 2022, 13