[Cuproptosis-related immune gene signature predicts clinical benefits from anti-PD-1/PD-L1 therapy in non-small-cell lung cancer

被引:8
作者
Luo, Linfeng [1 ,2 ,3 ]
Li, Anlin [1 ,2 ,3 ]
Fu, Sha [4 ,5 ]
Du, Wei [1 ,2 ,3 ]
He, Li-Na [1 ,2 ,3 ]
Zhang, Xuanye [1 ,2 ,3 ]
Wang, Yixing [1 ,2 ,3 ]
Zhou, Yixin [1 ,2 ,6 ]
Yunpeng, Yang [1 ,2 ,3 ]
Li, Zhang [1 ,2 ,3 ]
Hong, Shaodong [1 ,2 ,3 ]
机构
[1] State Key Lab Oncol South China, Guangzhou, Peoples R China
[2] Collaborat Innovat Ctr Canc Med, Guangzhou, Peoples R China
[3] Sun Yat Sen Univ, Dept Med Oncol, Canc Ctr, 651 Dongfeng East Rd, Guangzhou 510060, Guangdong, Peoples R China
[4] Sun Yat Sen Univ, Sun Yat Sen Mem Hosp, Dept Cellular & Mol Diagnost Ctr, Guangzhou 510120, Peoples R China
[5] Sun Yat Sen Univ, Guangdong Prov Key Lab Malignant Tumor Epigenet &, Guangzhou 510120, Peoples R China
[6] Sun Yat Sen Univ, Dept VIP Reg, Canc Ctr, Guangzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
Cuproptosis; Tumor immune microenvironment; Immunotherapy; PD-1; PD-L1; Non-small-cell lung cancer; DOUBLE-BLIND; OPEN-LABEL; ATEZOLIZUMAB; MULTICENTER; DOCETAXEL; PHASE-3; NSCLC; DEATH;
D O I
10.1007/s12026-022-09335-3
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Non-small-cell lung cancer (NSCLC) remains the major cause of cancer-related death. Immune checkpoint inhibition has become the cornerstone treatment for NSCLC. Cuproptosis is a newly identified form of cell death relying on mitochondrial respiration that might play a role in shaping tumor immune microenvironment (TIME). The clinical significance of cuproptosis-related genes (CRGs) remains unclear and warrant investigation. The current study extracted RNA sequencing profiles and corresponding clinical information from six aggregated datasets from the Gene Expression Omnibus (GEO) repository as the training set, and from The Cancer Genome Atlas (TCGA) database as the testing set. Cuproptosis-related immune genes (CRIMGs) were obtained through coexpression analysis, univariate Cox regression analysis, and LASSO analysis for overall survival (OS) association analysis. Consensus clustering was employed to divide the subjects into clusters. Stepwise multivariate Cox regression was used to establish the prognostic CRIMG_score from the CRIMGs. A 17-gene prediction signature was established that informed patients' OS both in the training and testing datasets (p < 0.001). The predictive value of the signature in terms of immunotherapeutic responses was assessed in two publicly available NSCLC immunotherapy datasets (POPLAR and OAK studies) and an internal dataset from Sun Yat-sen University Cancer Center (ORIENT-11 study). Patients in the high-risk group displayed worse survival, a characteristic suppressive tumor immune microenvironment, and low immunotherapeutic benefits compared to those in the low-risk group. Collectively, the CRIMG_score established herein could serve as a promising indicator of prognosis and immunotherapeutic response in patients with NSCLC.
引用
收藏
页码:213 / 228
页数:16
相关论文
共 49 条
[1]   Mitochondria determine response to anti-programmed cell death protein-1 (anti-PD-1) immunotherapy: An evidence-based hypothesis [J].
Akbari, Hassan ;
Taghizadeh-Hesary, Farzad ;
Bahadori, Moslem .
MITOCHONDRION, 2022, 62 :151-158
[2]   xCell: digitally portraying the tissue cellular heterogeneity landscape [J].
Aran, Dvir ;
Hu, Zicheng ;
Butte, Atul J. .
GENOME BIOLOGY, 2017, 18
[3]   Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression [J].
Becht, Etienne ;
Giraldo, Nicolas A. ;
Lacroix, Laetitia ;
Buttard, Benedicte ;
Elarouci, Nabila ;
Petitprez, Florent ;
Selves, Janick ;
Laurent-Puig, Pierre ;
Sautes-Fridman, Catherine ;
Fridman, Wolf H. ;
de Reynies, Aurelien .
GENOME BIOLOGY, 2016, 17
[4]   Biomarker Discovery in Non-Small Cell Lung Cancer: Integrating Gene Expression Profiling, Meta-analysis, and Tissue Microarray Validation [J].
Botling, Johan ;
Edlund, Karolina ;
Lohr, Miriam ;
Hellwig, Birte ;
Holmberg, Lars ;
Lambe, Mats ;
Berglund, Anders ;
Ekman, Simon ;
Bergqvist, Michael ;
Ponten, Fredrik ;
Koenig, Andre ;
Fernandes, Oswaldo ;
Karlsson, Mats ;
Helenius, Gisela ;
Karlsson, Christina ;
Rahnenfuehrer, Joerg ;
Hengstler, Jan G. ;
Micke, Patrick .
CLINICAL CANCER RESEARCH, 2013, 19 (01) :194-204
[5]   T-cell agonists in cancer immunotherapy [J].
Choi, Yeonjoo ;
Shi, Yaoyao ;
Haymaker, Cara L. ;
Naing, Aung ;
Ciliberto, Gennaro ;
Hajjar, Joud .
JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2020, 8 (02)
[6]   A survey of best practices for RNA-seq data analysis (vol 17, 13, 2016) [J].
Conesa, Ana ;
Madrigal, Pedro ;
Tarazona, Sonia ;
Gomez-Cabrero, David ;
Cervera, Alejandra ;
McPherson, Andrew ;
Szczesniak, Michal Wojciech ;
Gaffney, Daniel J. ;
Elo, Laura L. ;
Zhang, Xuegong ;
Mortazavi, Ali .
GENOME BIOLOGY, 2016, 17
[7]   Cell biology of copper [J].
Culotta, Valeria .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2010, 15 (01) :1-2
[8]   Validation of a Histology-Independent Prognostic Gene Signature for Early-Stage, Non-Small-Cell Lung Cancer Including Stage IA Patients [J].
Der, Sandy D. ;
Sykes, Jenna ;
Pintilie, Melania ;
Zhu, Chang-Qi ;
Strumpf, Dan ;
Liu, Ni ;
Jurisica, Igor ;
Shepherd, Frances A. ;
Tsao, Ming-Sound .
JOURNAL OF THORACIC ONCOLOGY, 2014, 9 (01) :59-64
[9]   Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data [J].
Finotello, Francesca ;
Mayer, Clemens ;
Plattner, Christina ;
Laschober, Gerhard ;
Rieder, Dietmar ;
Hackl, Hubert ;
Krogsdam, Anne ;
Loncova, Zuzana ;
Posch, Wilfried ;
Wilflingseder, Doris ;
Sopper, Sieghart ;
Ijsselsteijn, Marieke ;
Brouwer, Thomas P. ;
Johnson, Douglas ;
Xu, Yaomin ;
Wang, Yu ;
Sanders, Melinda E. ;
Estrada, Monica V. ;
Ericsson-Gonzalez, Paula ;
Charoentong, Pornpimol ;
Balko, Justin ;
de Miranda, Noel Filipe da Cunha Carvahlo ;
Trajanoski, Zlatko .
GENOME MEDICINE, 2019, 11 (1)
[10]   Connecting copper and cancer: from transition metal signalling to metalloplasia [J].
Ge, Eva J. ;
Bush, Ashley I. ;
Casini, Angela ;
Cobine, Paul A. ;
Cross, Justin R. ;
DeNicola, Gina M. ;
Dou, Q. Ping ;
Franz, Katherine J. ;
Gohil, Vishal M. ;
Gupta, Sanjeev ;
Kaler, Stephen G. ;
Lutsenko, Svetlana ;
Mittal, Vivek ;
Petris, Michael J. ;
Polishchuk, Roman ;
Ralle, Martina ;
Schilsky, Michael L. ;
Tonks, Nicholas K. ;
Vahdat, Linda T. ;
Van Aelst, Linda ;
Xi, Dan ;
Yuan, Peng ;
Brady, Donita C. ;
Chang, Christopher J. .
NATURE REVIEWS CANCER, 2022, 22 (02) :102-113