Classification of cancer types based on microRNA expression using a hybrid radial basis function and particle swarm optimization algorithm

被引:2
作者
Soleimani, Masoumeh [1 ]
Harooni, Aryan [2 ]
Erfani, Nasim [3 ]
Khan, Amjad Rehman [4 ,6 ]
Saba, Tanzila [4 ]
Bahaj, Saeed Ali [5 ]
机构
[1] Clemson Univ, Dept Math & Stat Sci, Clemson, SC USA
[2] Isfahan Univ Technol, Dept Elect & Comp Engn, Esfahan, Iran
[3] Islamic Azad Univ, Dept Comp Engn, Dolatabad Branch, Esfahan, Iran
[4] Prince Sultan Univ, Artificial Intelligence & Data Analyt Lab CCIS, Riyadh, Saudi Arabia
[5] Prince Sattam Bin Abdulaziz Univ, Coll Business Adm, MIS Dept, Al Kharj, Saudi Arabia
[6] Prince Sultan Univ, Artificial Intelligence & Data Analyt Lab CCIS, Riyadh 11586, Saudi Arabia
关键词
cancer; health risks; microRNA; particle swarm optimization; radial basis function neural network; MIRNA;
D O I
10.1002/jemt.24492
中图分类号
R602 [外科病理学、解剖学]; R32 [人体形态学];
学科分类号
100101 ;
摘要
The diagnosis and treatment of cancer is one of the most challenging aspects of the medical profession, despite advances in disease diagnosis. MicroRNAs are small noncoding RNA molecules involved in regulating gene expression and are associated with several cancer types. Therefore, the analysis of microRNA data has become one of the most important areas of cancer research in recent years. This paper presents an improved method for cancer-type classification based on microRNA expression data using a hybrid radial basis function (RBF) and particle swarm optimization (PSO) algorithm. Two datasets containing microRNA information were used, and preprocessing and normalization operations were performed on the raw data. Feature selection was carried out by using the PSO algorithm, which can identify the most relevant and informative features in the data along with helping to prioritize them. Using a PSO algorithm for feature selection is an effective approach to microRNA analysis. This enhances the accuracy and reliability of cancer-type classifications based on microRNA expression data. In the proposed method, we, respectively, achieved an accuracy of 0.95% and 0.91% on both datasets, with an average of 0.93%, using an improved RBF neural network classifier. These results demonstrate that the proposed method outperforms previous works. Research Highlights center dot To enhance the accuracy of cancer-type classifications based on microRNA expression data. center dot We present a minimal feature selection method using particle swarm optimization to reduce computational load & radial basis function to improve accuracy.
引用
收藏
页码:1052 / 1062
页数:11
相关论文
共 34 条
  • [1] A literature review of microRNA and gene signaling pathways involved in the apoptosis pathway of lung cancer
    Abolfathi, Hanie
    Arabi, Mohadeseh
    Sheikhpour, Mojgan
    [J]. RESPIRATORY RESEARCH, 2023, 24 (01)
  • [2] Intelligent system for feature selection based on rough set and chaotic binary grey wolf optimisation
    Azar, Ahmad Taher
    Anter, Ahmed M.
    Fouad, Khaled M.
    [J]. INTERNATIONAL JOURNAL OF COMPUTER APPLICATIONS IN TECHNOLOGY, 2020, 63 (1-2) : 4 - 24
  • [3] Bahadori M., 2023, AI and IoT-Based Technologies for Precision Medicine, P431
  • [4] Genetic and Epigenetic Silencing of MicroRNA-203 Enhances ABL1 and BCR-ABL1 Oncogene Expression (vol 13, pg 496, 2008)
    Bueno, Maria J.
    Perez de Castro, Ignacio
    Gomez de Cedron, Marta
    Santos, Javier
    Calin, George A.
    Cigudosa, Juan C.
    Croce, Carlo M.
    Fernandez-Piqueras, Jose
    Malumbres, Marcos
    [J]. CANCER CELL, 2016, 29 (04) : 607 - 607
  • [5] Microscopic abnormality classification of cardiac murmurs using ANFIS and HMM
    Fahad, H. M.
    Khan, M. Usman Ghani
    Saba, Tanzila
    Rehman, Amjad
    Iqbal, Sajid
    [J]. MICROSCOPY RESEARCH AND TECHNIQUE, 2018, 81 (05) : 449 - 457
  • [6] Aberrant promoter hypermethylation of miR-335 and miR-145 is involved in breast cancer PD-L1 overexpression
    Hajibabaei, Sara
    Sotoodehnejadnematalahi, Fattah
    Nafissi, Nahid
    Zeinali, Sirous
    Azizi, Masoumeh
    [J]. SCIENTIFIC REPORTS, 2023, 13 (01)
  • [7] Combinatorial targeting of microRNA-26b and microRNA-101 exerts a synergistic inhibition on cyclooxygenase-2 in brain metastatic triple-negative breast cancer cells
    Harati, Rania
    Mabondzo, Aloise
    Tlili, Abdelaziz
    Khoder, Ghalia
    Mahfood, Mona
    Hamoudi, Rifat
    [J]. BREAST CANCER RESEARCH AND TREATMENT, 2021, 187 (03) : 695 - 713
  • [8] LSDAR: A light -weight structure based data aggregation routing protocol with secure internet of things integrated next -generation sensor networks
    Haseeb, Khalid
    Islam, Naveed
    Saba, Tanzila
    Rehman, Amjad
    Mehmood, Zahid
    [J]. SUSTAINABLE CITIES AND SOCIETY, 2020, 54
  • [9] Ibrahim R, 2013, IEEE INT C BIOINFORM, DOI 10.1109/BIBM.2013.6732544
  • [10] Retinal imaging analysis based on vessel detection
    Jamal, Arshad
    Alkawaz, Mohammed Hazim
    Rehman, Amjad
    Saba, Tanzila
    [J]. MICROSCOPY RESEARCH AND TECHNIQUE, 2017, 80 (07) : 799 - 811