DNA methylation regulator-mediated modification patterns and risk of intracranial aneurysm: a multi-omics and epigenome-wide association study integrating machine learning, Mendelian randomization, eQTL and mQTL data

被引:17
作者
Maimaiti, Aierpati [1 ]
Turhon, Mirzat [2 ,3 ]
Abulaiti, Aimitaji [4 ]
Dilixiati, Yilidanna [4 ]
Zhang, Fujunhui [2 ,3 ]
Axieer, Aximujiang [1 ]
Kadeer, Kaheerman [1 ]
Zhang, Yisen [2 ,3 ]
Maimaitili, Aisha [1 ]
Yang, Xinjian [2 ,3 ]
机构
[1] Xinjiang Med Univ, Affiliated Hosp 1, Dept Neurosurg, Urumqi 830017, Xinjiang, Peoples R China
[2] Capital Med Univ, Beijing Neurosurg Inst, Dept Intervent Neuroradiol, Beijing 100070, Peoples R China
[3] Capital Med Univ, Beijing Tiantan Hosp, Dept Intervent Neuroradiol, Beijing, Peoples R China
[4] Xinjiang Med Univ, Urumqi, Xinjiang, Peoples R China
关键词
Intracranial aneurysms; DNA methylation regulator; Multi-omics; Machine learning; Genome-wide association studies; Mendelian randomization; SUBARACHNOID HEMORRHAGE; DNMT3A; IMMUNE; PREDICTORS; EXPRESSION; SMOKING; DISEASE; CANCER; BRAIN; FORM;
D O I
10.1186/s12967-023-04512-w
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
BackgroundIntracranial aneurysms (IAs) pose a significant and intricate challenge. Elucidating the interplay between DNA methylation and IA pathogenesis is paramount to identify potential biomarkers and therapeutic interventions.MethodsWe employed a comprehensive bioinformatics investigation of DNA methylation in IA, utilizing a transcriptomics-based methodology that encompassed 100 machine learning algorithms, genome-wide association studies (GWAS), Mendelian randomization (MR), and summary-data-based Mendelian randomization (SMR). Our sophisticated analytical strategy allowed for a systematic assessment of differentially methylated genes and their implications on the onset, progression, and rupture of IA.ResultsWe identified DNA methylation-related genes (MRGs) and associated molecular pathways, and the MR and SMR analyses provided evidence for potential causal links between the observed DNA methylation events and IA predisposition.ConclusionThese insights not only augment our understanding of the molecular underpinnings of IA but also underscore potential novel biomarkers and therapeutic avenues. Although our study faces inherent limitations and hurdles, it represents a groundbreaking initiative in deciphering the intricate relationship between genetic, epigenetic, and environmental factors implicated in IA pathogenesis.
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页数:25
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