Draft Genome Sequence and Annotation of Priestia aryabhattai Strain BD1 Isolated from a Dye Sediment

被引:2
作者
Nsa, Imade Y. [1 ]
Omolere, Blessing M. [1 ]
机构
[1] Univ Lagos, Fac Sci, Dept Microbiol, Lagos, Nigeria
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2023年 / 12卷 / 02期
关键词
QUALITY;
D O I
10.1128/mra.01175-22
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The 5,079,658-bp genome of Priestia aryabhattai strain BD1 isolated from a dye waste sediment consists of 5,185 protein-coding genes, of which 790 were hypothetical proteins, 63 were RNAs, and 54 were pseudogenes. Putative genes involved in oxygen/redox potential sensing, dye degradation, metal toxicity, antibiotic tolerance, and benzoate metabolism were found. The 5,079,658-bp genome of Priestia aryabhattai strain BD1 isolated from a dye waste sediment consists of 5,185 protein-coding genes, of which 790 were hypothetical proteins, 63 were RNAs, and 54 were pseudogenes. Putative genes involved in oxygen/redox potential sensing, dye degradation, metal toxicity, antibiotic tolerance, and benzoate metabolism were found.
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页数:2
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共 14 条
[1]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[2]   Characterization of Soil Bacteria with Potential to Degrade Benzoate and Antagonistic to Fungal and Bacterial Phytopathogens [J].
Esikova, Tatiana Z. ;
Anokhina, Tatiana O. ;
Abashina, Tatiana N. ;
Suzina, Nataliya E. ;
Solyanikova, Inna P. .
MICROORGANISMS, 2021, 9 (04)
[3]   Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species [J].
Gupta, Radhey S. ;
Patel, Sudip ;
Saini, Navneet ;
Chen, Shu .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (11) :5753-5798
[4]   QUAST: quality assessment tool for genome assemblies [J].
Gurevich, Alexey ;
Saveliev, Vladislav ;
Vyahhi, Nikolay ;
Tesler, Glenn .
BIOINFORMATICS, 2013, 29 (08) :1072-1075
[5]   RefSeq: an update on prokaryotic genome annotation and curation [J].
Haft, Daniel H. ;
DiCuccio, Michael ;
Badretdin, Azat ;
Brover, Vyacheslav ;
Chetvernin, Vyacheslav ;
O'Neill, Kathleen ;
Li, Wenjun ;
Chitsaz, Farideh ;
Derbyshire, Myra K. ;
Gonzales, Noreen R. ;
Gwadz, Marc ;
Lu, Fu ;
Marchler, Gabriele H. ;
Song, James S. ;
Thanki, Narmada ;
Yamashita, Roxanne A. ;
Zheng, Chanjuan ;
Thibaud-Nissen, Francoise ;
Geer, Lewis Y. ;
Marchler-Bauer, Aron ;
Pruitt, Kim D. .
NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) :D851-D860
[6]   Bacillus aryabhattai SMNCH17-07 Strain: First Isolation and Characterization from Textile Wastewater with Evaluation of Its Decolorization Ability against Azo Dyes [J].
Korcan, Safiye Elif ;
Citekci, Kubra ;
Aydin, Busra ;
Abed, Ahmed Badri ;
Akkus, Gulderen Uysal .
TEKSTIL VE KONFEKSIYON, 2022, 32 (02) :99-107
[7]   ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences [J].
Laslett, D ;
Canback, B .
NUCLEIC ACIDS RESEARCH, 2004, 32 (01) :11-16
[8]   RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation [J].
Li, Wenjun ;
O'Neill, Kathleen R. ;
Haft, Daniel H. ;
DiCuccio, Michael ;
Chetvernin, Vyacheslav ;
Badretdin, Azat ;
Coulouris, George ;
Chitsaz, Farideh ;
Derbyshire, Myra K. ;
Durkin, A. Scott ;
Gonzales, Noreen R. ;
Gwadz, Marc ;
Lanczycki, Christopher J. ;
Song, James S. ;
Thanki, Narmada ;
Wang, Jiyao ;
Yamashita, Roxanne A. ;
Yang, Mingzhang ;
Zheng, Chanjuan ;
Marchler-Bauer, Aron ;
Thibaud-Nissen, Francoise .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D1020-D1028
[9]   Versatile genome assembly evaluation with QUAST-LG [J].
Mikheenko, Alla ;
Prjibelski, Andrey ;
Saveliev, Vladislav ;
Antipov, Dmitry ;
Gurevich, Alexey .
BIOINFORMATICS, 2018, 34 (13) :142-150
[10]   Draft Genome Sequence and Annotation of the Synthetic Textile Dye-Decolorizing Strain Bacillus amyloliquefaciens AD20, Isolated from a Dye Waste Pond [J].
Nsa, Imade Y. ;
Odunsi, Ayodeji A. ;
Amund, Olukayode O. .
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (34)