Genome sequence of the Klebsiella quasipneumoniae bacteriophage EKq1 with activity against Klebsiella pneumoniae

被引:2
作者
Bird, Jordan T. [1 ]
Burke, Kevin A. [2 ]
Urick, Caitlin D. [2 ]
Braverman, Jamie L. [2 ]
Mzhavia, Nino [2 ]
Ellison, Damon W. [3 ]
Nikolich, Mikeljon P. [2 ]
Filippov, Andrey A. [2 ]
机构
[1] Univ Arkansas, Dept Biochem & Mol Biol, Little Rock, AR USA
[2] Walter Reed Army Inst Res, Wound Infect Dept, Bacterial Dis Branch, Silver Spring, MD 20910 USA
[3] Walter Reed Army Inst Res, Bacterial Dis Branch, Silver Spring, MD USA
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 01期
关键词
Klebsiella quasipneumoniae; Klebsiella pneumoniae; phage EKq1; complete genome sequence; class Caudoviricetes; unclassified Caudoviricetes; lytic phage; therapeutic candidate;
D O I
10.1128/MRA.00954-23
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We describe the genome of a lytic phage EKq1 isolated on Klebsiella quasipneumoniae, with activity against Klebsiella pneumoniae. EKq1 is an unclassified representative of the class Caudoviricetes, similar to Klebsiella phages VLCpiS8c, phiKp_7-2, and vB_KleS-HSE3. The 48,244-bp genome has a GC content of 56.43% and 63 predicted protein-coding genes.
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页数:4
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共 29 条
[1]   How to Name and Classify Your Phage: An Informal Guide [J].
Adriaenssens, Evelien M. ;
Brister, J. Rodney .
VIRUSES-BASEL, 2017, 9 (04)
[2]   CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database [J].
Alcock, Brian P. ;
Raphenya, Amogelang R. ;
Lau, Tammy T. Y. ;
Tsang, Kara K. ;
Bouchard, Megane ;
Edalatmand, Arman ;
Huynh, William ;
Nguyen, Anna-Lisa, V ;
Cheng, Annie A. ;
Liu, Sihan ;
Min, Sally Y. ;
Miroshnichenko, Anatoly ;
Tran, Hiu-Ki ;
Werfalli, Rafik E. ;
Nasir, Jalees A. ;
Oloni, Martins ;
Speicher, David J. ;
Florescu, Alexandra ;
Singh, Bhavya ;
Faltyn, Mateusz ;
Hernandez-Koutoucheva, Anastasia ;
Sharma, Arjun N. ;
Bordeleau, Emily ;
Pawlowski, Andrew C. ;
Zubyk, Haley L. ;
Dooley, Damion ;
Griffiths, Emma ;
Maguire, Finlay ;
Winsor, Geoff L. ;
Beiko, Robert G. ;
Brinkman, Fiona S. L. ;
Hsiao, William W. L. ;
Domselaar, Gary, V ;
McArthur, Andrew G. .
NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) :D517-D525
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats [J].
Bland, Charles ;
Ramsey, Teresa L. ;
Sabree, Fareedah ;
Lowe, Micheal ;
Brown, Kyndall ;
Kyrpides, Nikos C. ;
Hugenholtz, Philip .
BMC BIOINFORMATICS, 2007, 8 (1)
[5]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[6]   Pharokka: a fast scalable bacteriophage annotation tool [J].
Bouras, George ;
Nepal, Roshan ;
Houtak, Ghais ;
Psaltis, Alkis James ;
Wormald, Peter-John ;
Vreugde, Sarah .
BIOINFORMATICS, 2023, 39 (01)
[7]   Sensitive protein alignments at tree-of-life scale using DIAMOND [J].
Buchfink, Benjamin ;
Reuter, Klaus ;
Drost, Hajk-Georg .
NATURE METHODS, 2021, 18 (04) :366-+
[8]   Fast and sensitive protein alignment using DIAMOND [J].
Buchfink, Benjamin ;
Xie, Chao ;
Huson, Daniel H. .
NATURE METHODS, 2015, 12 (01) :59-60
[9]   tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes [J].
Chan, Patricia P. ;
Lin, Brian Y. ;
Mak, Allysia J. ;
Lowe, Todd M. .
NUCLEIC ACIDS RESEARCH, 2021, 49 (16) :9077-9096
[10]   VFDB: a reference database for bacterial virulence factors [J].
Chen, LH ;
Yang, J ;
Yu, J ;
Ya, ZJ ;
Sun, LL ;
Shen, Y ;
Jin, Q .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D325-D328