Sharing sensitive research data in the practice of personalised medicine

被引:1
作者
Molnar Viktor [1 ]
Cs Sagi Judit [1 ]
Molnar Maria Judit [1 ]
机构
[1] Semmelweis Egyet, Altalan Orvostud Kar, Genom Med Ritka Betegsegek Int, Budapest, Hungary
关键词
precision medicine; biobank; data sharing; privacy-preserving federated learning;
D O I
10.1556/650.2023.32759
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Fragmentation of health data and biomedical research data is a major obstacle for precision medicine based on data -driven decisions. The development of personalized medicine requires the efficient exploitation of health data re-sources that are extraordinary in size and complexity, but highly fragmented, as well as technologies that enable data sharing across institutions and even borders. Biobanks are both sample archives and data integration centers. The analysis of large biobank data warehouses in federated datasets promises to yield conclusions with higher statistical power. A prerequisite for data sharing is harmonization, i.e., the mapping of the unique clinical and molecular char-acteristics of samples into a unified data model and standard codes. These databases, which are aligned to a common schema, then make healthcare information available for privacy-preserving federated data sharing and learning. The re-evaluation of sensitive health data is inconceivable without the protection of privacy, the legal and conceptual framework for which is set out in the GDPR (General Data Protection Regulation) and the FAIR (findable, accessi-ble, interoperable, reusable) principles. For biobanks in Europe, the BBMRI-ERIC (Biobanking and Biomolecular Research Infrastructure - European Research Infrastructure Consortium) research infrastructure develops common guidelines, which the Hungarian BBMRI Node joined in 2021. As the first step, a federation of biobanks can connect fragmented datasets, providing high-quality data sets motivated by multiple research goals. Extending the approach to real-word data could also allow for higher level evaluation of data generated in the real world of patient care, and thus take the evidence generated in clinical trials within a rigorous framework to a new level. In this publication, we present the potential of federated data sharing in the context of the Semmelweis University Biobanks joint project.
引用
收藏
页码:811 / 819
页数:9
相关论文
共 28 条
  • [21] Federated learning enables big data for rare cancer boundary detection
    Pati, Sarthak
    Baid, Ujjwal
    Edwards, Brandon
    Sheller, Micah
    Wang, Shih-Han
    Reina, G. Anthony
    Foley, Patrick
    Gruzdev, Alexey
    Karkada, Deepthi
    Davatzikos, Christos
    Sako, Chiharu
    Ghodasara, Satyam
    Bilello, Michel
    Mohan, Suyash
    Vollmuth, Philipp
    Brugnara, Gianluca
    Preetha, Chandrakanth J.
    Sahm, Felix
    Maier-Hein, Klaus
    Zenk, Maximilian
    Bendszus, Martin
    Wick, Wolfgang
    Calabrese, Evan
    Rudie, Jeffrey
    Villanueva-Meyer, Javier
    Cha, Soonmee
    Ingalhalikar, Madhura
    Jadhav, Manali
    Pandey, Umang
    Saini, Jitender
    Garrett, John
    Larson, Matthew
    Jeraj, Robert
    Currie, Stuart
    Frood, Russell
    Fatania, Kavi
    Huang, Raymond Y.
    Chang, Ken
    Balana, Carmen
    Capellades, Jaume
    Puig, Josep
    Trenkler, Johannes
    Pichler, Josef
    Necker, Georg
    Haunschmidt, Andreas
    Meckel, Stephan
    Shukla, Gaurav
    Liem, Spencer
    Alexander, Gregory S.
    Lombardo, Joseph
    [J]. NATURE COMMUNICATIONS, 2022, 13 (01)
  • [22] DISEASES: Text mining and data integration of disease-gene associations
    Pletscher-Frankild, Sune
    Palleja, Albert
    Tsafou, Kalliopi
    Binder, Janos X.
    Jensen, Lars Juhl
    [J]. METHODS, 2015, 74 : 83 - 89
  • [23] The future of digital health with federated learning
    Rieke, Nicola
    Hancox, Jonny
    Li, Wenqi
    Milletari, Fausto
    Roth, Holger R.
    Albarqouni, Shadi
    Bakas, Spyridon
    Galtier, Mathieu N.
    Landman, Bennett A.
    Maier-Hein, Klaus
    Ourselin, Sebastien
    Sheller, Micah
    Summers, Ronald M.
    Trask, Andrew
    Xu, Daguang
    Baust, Maximilian
    Cardoso, M. Jorge
    [J]. NPJ DIGITAL MEDICINE, 2020, 3 (01)
  • [24] Clinical research data sharing: What an open science world means for researchers involved in evidence synthesis
    Ross J.S.
    [J]. Systematic Reviews, 5 (1)
  • [25] Opportunities and challenges in using real-world data for health care
    Rudrapatna, Vivek A.
    Butte, Atul J.
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 2020, 130 (02) : 565 - 574
  • [26] Health data privacy through homomorphic encryption and distributed ledger computing: an ethical-legal qualitative expert assessment study
    Scheibner, James
    Ienca, Marcello
    Vayena, Effy
    [J]. BMC MEDICAL ETHICS, 2022, 23 (01)
  • [27] Toward data lakes as central building blocks for data management and analysis
    Wieder, Philipp
    Nolte, Hendrik
    [J]. FRONTIERS IN BIG DATA, 2022, 5
  • [28] Improved Discharge Energy Density of Poly(vinylidene fluoride)-Based Nanocomposites via a Small Amount of Dopamine-Modified TiO2 Nanosheets
    Xu, Jingjing
    Fu, Chao
    Chu, Huiying
    Qian, Jing
    Li, Weiyan
    Ran, Xianghai
    Nie, Wei
    [J]. JOURNAL OF ELECTRONIC MATERIALS, 2021, 50 (08) : 4250 - 4260