An m7G-related lncRNA signature predicts prognosis and reveals the immune microenvironment in bladder cancer

被引:4
|
作者
Li, Zhenchi [1 ,2 ]
Zhao, Jie [1 ,2 ]
Huang, Xing [3 ]
Wang, Jiangping [1 ]
机构
[1] Nanjing Med Univ, Affiliated Taizhou Peoples Hosp, Taizhou Sch Clin Med, Dept Urol, 366 Taihu Rd, Taizhou 225300, Jiangsu, Peoples R China
[2] Dalian Med Univ, Grad Sch, 9 West Sect,Lushun South Rd, Dalian, Liaoning, Peoples R China
[3] China Med Univ, Shengjing Hosp, Dept Gen Surg, Shenyang, Liaoning, Peoples R China
关键词
EPITHELIAL-MESENCHYMAL TRANSITION; LONG NONCODING RNA; MESSENGER-RNA; TUMOR; PROSTATE; CHEMOTHERAPY;
D O I
10.1038/s41598-023-31424-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bladder cancer (BC) is a representative malignant tumor type, and the significance of N7-methyguanosine (m7G)-related lncRNAs in BC is still unclear. Utilizing m7G-related lncRNAs, we developed a prognostic model to evaluate BC's prognosis and tumor immunity. First, we selected prognostic lncRNAs related to m7G by co-expression analysis and univariate Cox regression and identified two clusters by consensus clustering. The two clusters differed significantly in terms of overall survival, clinicopathological factors, and immune microenvironment. Then, we further constructed a linear stepwise regression signature by multivariate Cox and least absolute shrinkage and selection operator (LASSO) regression analysis. Patients fell into high-risk (HR) and low-risk (LR) groups considering the train group risk score. HR group had worse prognoses when stratified by clinicopathological factors. The receiver operating curve (ROC) suggested that the signature had a better prognostic value. Tumor mutation burden (TMB) showed a negative relevance to the risk score, and patients with low TMB presented a better prognosis. Validation of the signature was carried out with multivariate and univariate Cox regression analysis, nomogram, principal component analysis (PCA), C-Index, and quantitative reverse transcriptase PCR (qRT-PCR). Finally, the gene set enrichment analysis (GSEA) demonstrated the enrichment of tumor-related pathways in HR groups, and single-sample gene set enrichment analysis (ssGSEA) indicated a close association of risk score with tumor immunity. According to the drug sensitivity test, the signature could predict the effects of conventional chemotherapy drugs. In conclusion, our study indicates the close relevance of m7G-related lncRNAs to BC, and the established risk signature can effectively evaluate patient prognosis and tumor immunity and is expected to become a novel prognostic marker for BC patients.
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页数:15
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