Ancylobacter mangrovi sp. nov., a novel endophytic bacterium isolated from mangrove plant

被引:1
作者
Li, Fei-Na [1 ]
Zheng, Zhou-Qing [2 ]
Chen, Ming-Sheng [2 ]
Chen, Xiao-Hui [2 ]
Tuo, Li [2 ]
机构
[1] Capital Med Univ, Beijing Childrens Hosp,Key Lab Major Dis Children, Beijing Pediat Res Inst,Minist Educ,Natl Ctr Child, Natl Clin Res Ctr Resp Dis,Lab Resp Dis,Beijing Ke, Beijing 100045, Peoples R China
[2] Zunyi Med Univ, Life Sci Inst, Zunyi 563006, Peoples R China
基金
北京市自然科学基金; 中国国家自然科学基金;
关键词
Ancylobacter; Endophytic bacterium; Polyphasic approach; Mangrove; ANNOTATION; EXTRACTION; DATABASE; ROOTS;
D O I
10.1016/j.syapm.2023.126419
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Two novel strains GSK1Z-4-2T and MQZ15Z-1 were isolated from branches of mangrove plants collected from Guangxi Zhuang Autonomous Region, China. Both strains were Gram-negative, aerobic, non-flagellated and non-spore-forming bacteria. The comparison of 16S rRNA gene sequences initially indicated that the two strains were assigned to the genus Ancylobacter with sharing the highest similarity to Ancylobacter pratisalsi DSM 102029T (97.3%). The 16S rRNA gene sequence similarity, average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strains GSK1Z-4-2T and MQZ15Z-1 were 99.9%, 97.4% and 77.4%, respectively, which revealed that the two strains belonged to the same species. Phylogenetic analyses based on 16S rRNA gene sequences and the core proteome showed that the two strains formed a wellsupported cluster with A. pratisalsi DSM 102029T. Moreover, the ANI and isDDH values between strain GSK1Z-4-2T and A. pratisalsi DSM 102029T were 83.0% and 25.8%, respectively, demonstrating that strain GSK1Z-4-2T was a previously undescribed species. Meanwhile, strains GSK1Z-4-2T and MQZ15Z-1 exhibited most of chemotaxonomic and phenotypic features consistent with the description of the genus Ancylobacter. Based on the polyphasic data, strains GSK1Z-4-2T and MQZ15Z-1 should represent a novel species of the genus Ancylobacter, for which the name Ancylobacter mangrovi sp. nov. is proposed. The type strain is GSK1Z-4-2T (=MCCC 1K07181T = JCM 34924T).
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共 47 条
[1]   Ancylobacter sonchi sp nov., a novel methylotrophic bacterium from roots of Sonchus arvensis L. [J].
Agafonova, Nadezhda V. ;
Kaparullina, Elena N. ;
Trotsenko, Yuri A. ;
Doronina, Nina V. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (11) :4552-4558
[2]   M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics data [J].
Avram, Oren ;
Rapoport, Dana ;
Portugez, Shir ;
Pupko, Tal .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W88-W92
[3]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[4]   Ancylobacter lacus sp. nov. and Ancylobacter plantiphilus sp. nov., Novel Aerobic Facultative Methylotrophic Bacteria [J].
Chemodurova, A. A. ;
Kaparullina, E. N. ;
Machulin, A. V. ;
Sproeer, C. ;
Lang, E. ;
Doronina, N., V .
MICROBIOLOGY, 2020, 89 (01) :35-43
[5]   Phycicoccus mangrovi sp. nov., a novel endophytic actinobacterium isolated from bark of Sonneratia apetala [J].
Chen, Ming-Sheng ;
Chen, Xiao-Hui ;
Yan, Xiao-Rui ;
Li, Fei-Na ;
Tuo, Li .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2021, 44 (06)
[6]   Stakelama flava sp. nov., a novel endophytic bacterium isolated from a branch of Kandelia candel [J].
Chen, Xiao-Hui ;
Chen, Ming-Sheng ;
Li, Fei-Na ;
Tuo, Li .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, 72 (01)
[7]   Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea [J].
Chun, Jongsik ;
Rainey, Fred A. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :316-324
[8]   Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI [J].
Ciufo, Stacy ;
Kannan, Sivakumar ;
Sharma, Shobha ;
Badretdin, Azat ;
Clark, Karen ;
Turner, Sean ;
Brover, Slava ;
Schoch, Conrad L. ;
Kimchi, Avi ;
DiCuccio, Michael .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2018, 68 (07) :2386-2392
[9]   DISTRIBUTION OF MENAQUINONES IN ACTINOMYCETES AND CORYNEBACTERIA [J].
COLLINS, MD ;
PIROUZ, T ;
GOODFELLOW, M ;
MINNIKIN, DE .
JOURNAL OF GENERAL MICROBIOLOGY, 1977, 100 (JUN) :221-230
[10]   ARCHAEA IN COASTAL MARINE ENVIRONMENTS [J].
DELONG, EF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5685-5689