rs56405341 Variant Associates with Expression of C4orf33 and C4orf33 Was Downregulated in Alzheimer's Disease and Progressive Supranuclear Palsy

被引:0
作者
Zhang, Yan [1 ]
Xue, Yanli [2 ]
Wang, Longcai [3 ]
Han, Zhifa [4 ]
Wang, Tao [5 ]
Zhang, Haihua [6 ]
Liu, Guiyou [5 ,6 ,7 ,8 ,9 ]
Xiao, Xingjun [10 ]
机构
[1] Weifang Med Univ, Dept Pathol, Affiliated Hosp, Weifang, Peoples R China
[2] Capital Med Univ, Sch Biomed Engn, Beijing, Peoples R China
[3] Weifang Med Univ, Dept Anesthesiol, Affiliated Hosp, Weifang, Peoples R China
[4] Chinese Acad Med Sci, Inst Basic Med Sci, State Key Lab Med Mol Biol, Beijing, Peoples R China
[5] Chinese Inst Brain Res, Beijing, Peoples R China
[6] Capital Med Univ, Beijing Inst Brain Disorders, Collaborat Innovat Ctr Brain Disorders, Lab Brain Disorders,Minist Sci & Technol, Beijing, Peoples R China
[7] Shandong First Med Univ & Shandong Acad Med Sci, Key Lab Cerebral Microcirculat Univ Shandong, Tai An, Shandong, Peoples R China
[8] Shandong First Med Univ & Shandong Acad Med Sci, Affiliated Hosp 2, Dept Neurol, Tai An, Shandong, Peoples R China
[9] Capital Med Univ, Beijing Key Lab Hypoxia Translat Med, Xuanwu Hosp, Natl Engn Lab Internet Med Diag & Treatment Techn, Beijing, Peoples R China
[10] Harbin Med Univ, Dept Neurol, Affiliated Hosp 2, Harbin, Peoples R China
基金
中国国家自然科学基金;
关键词
Alzheimer's disease; gene expression; primary age-related tauopathy; progressive supranuclear palsy; rs56405341; IDENTIFICATION; TRANSCRIPTOME; RISK;
D O I
10.3233/JAD-230327
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
The first primary age-related tauopathy (PART) genome-wide association study confirmed significant associations of Alzheimer's disease (AD) and progressive supranuclear palsy (PSP) genetic variants with PART, and highlighted a novel genetic variant rs56405341. Here, we perform a comprehensive analysis of rs56405341. We found that rs56405341 was significantly associated with C4orf33 mRNA expression, but not JADE1 mRNA expression in multiple brain tissues. C4orf33 was mainly expressed in cerebellar hemisphere and cerebellum, and JADE1 was mainly expressed in thyroid, and coronary artery. Meanwhile, we found significantly downregulated C4orf33 expression both AD and PSP compared with normal controls, respectively.
引用
收藏
页码:57 / 64
页数:8
相关论文
共 27 条
  • [1] Genetic effects on gene expression across human tissues
    Aguet, Francois
    Brown, Andrew A.
    Castel, Stephane E.
    Davis, Joe R.
    He, Yuan
    Jo, Brian
    Mohammadi, Pejman
    Park, Yoson
    Parsana, Princy
    Segre, Ayellet V.
    Strober, Benjamin J.
    Zappala, Zachary
    Cummings, Beryl B.
    Gelfand, Ellen T.
    Hadley, Kane
    Huang, Katherine H.
    Lek, Monkol
    Li, Xiao
    Nedzel, Jared L.
    Nguyen, Duyen Y.
    Noble, Michael S.
    Sullivan, Timothy J.
    Tukiainen, Taru
    MacArthur, Daniel G.
    Getz, Gad
    Management, Nih Program
    Addington, Anjene
    Guan, Ping
    Koester, Susan
    Little, A. Roger
    Lockhart, Nicole C.
    Moore, Helen M.
    Rao, Abhi
    Struewing, Jeffery P.
    Volpi, Simona
    Collection, Biospecimen
    Brigham, Lori E.
    Hasz, Richard
    Hunter, Marcus
    Johns, Christopher
    Johnson, Mark
    Kopen, Gene
    Leinweber, William F.
    Lonsdale, John T.
    McDonald, Alisa
    Mestichelli, Bernadette
    Myer, Kevin
    Roe, Bryan
    Salvatore, Michael
    Shad, Saboor
    [J]. NATURE, 2017, 550 (7675) : 204 - +
  • [2] Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases
    Allen, Mariet
    Carrasquillo, Minerva M.
    Funk, Cory
    Heavner, Benjamin D.
    Zou, Fanggeng
    Younkin, Curtis S.
    Burgess, Jeremy D.
    Chai, High-Seng
    Crook, Julia
    Eddy, James A.
    Li, Hongdong
    Logsdon, Ben
    Peters, Mette A.
    Dang, Kristen K.
    Wang, Xue
    Serie, Daniel
    Wang, Chen
    Thuy Nguyen
    Lincoln, Sarah
    Malphrus, Kimberly
    Bisceglio, Gina
    Li, Ma
    Golde, Todd E.
    Mangravite, Lara M.
    Asmann, Yan
    Price, Nathan D.
    Petersen, Ronald C.
    Graff-Radford, Neill R.
    Dickson, Dennis W.
    Younkin, Steven G.
    Ertekin-Taner, Nilufer
    [J]. SCIENTIFIC DATA, 2016, 3
  • [3] The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
    Ardlie, Kristin G.
    DeLuca, David S.
    Segre, Ayellet V.
    Sullivan, Timothy J.
    Young, Taylor R.
    Gelfand, Ellen T.
    Trowbridge, Casandra A.
    Maller, Julian B.
    Tukiainen, Taru
    Lek, Monkol
    Ward, Lucas D.
    Kheradpour, Pouya
    Iriarte, Benjamin
    Meng, Yan
    Palmer, Cameron D.
    Esko, Tonu
    Winckler, Wendy
    Hirschhorn, Joel N.
    Kellis, Manolis
    MacArthur, Daniel G.
    Getz, Gad
    Shabalin, Andrey A.
    Li, Gen
    Zhou, Yi-Hui
    Nobel, Andrew B.
    Rusyn, Ivan
    Wright, Fred A.
    Lappalainen, Tuuli
    Ferreira, Pedro G.
    Ongen, Halit
    Rivas, Manuel A.
    Battle, Alexis
    Mostafavi, Sara
    Monlong, Jean
    Sammeth, Michael
    Mele, Marta
    Reverter, Ferran
    Goldmann, Jakob M.
    Koller, Daphne
    Guigo, Roderic
    McCarthy, Mark I.
    Dermitzakis, Emmanouil T.
    Gamazon, Eric R.
    Im, Hae Kyung
    Konkashbaev, Anuar
    Nicolae, Dan L.
    Cox, Nancy J.
    Flutre, Timothee
    Wen, Xiaoquan
    Stephens, Matthew
    [J]. SCIENCE, 2015, 348 (6235) : 648 - 660
  • [4] C9orf72-mediated ALS and FTD: multiple pathways to disease
    Balendra, Rubika
    Isaacs, Adrian M.
    [J]. NATURE REVIEWS NEUROLOGY, 2018, 14 (09) : 544 - 558
  • [5] NCBI GEO: archive for functional genomics data sets-update
    Barrett, Tanya
    Wilhite, Stephen E.
    Ledoux, Pierre
    Evangelista, Carlos
    Kim, Irene F.
    Tomashevsky, Maxim
    Marshall, Kimberly A.
    Phillippy, Katherine H.
    Sherman, Patti M.
    Holko, Michelle
    Yefanov, Andrey
    Lee, Hyeseung
    Zhang, Naigong
    Robertson, Cynthia L.
    Serova, Nadezhda
    Davis, Sean
    Soboleva, Alexandra
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) : D991 - D995
  • [6] Religious Orders Study and Rush Memory and Aging Project
    Bennett, David A.
    Buchman, Aron S.
    Boyle, Patricia A.
    Barnes, Lisa L.
    Wilson, Robert S.
    Schneider, Julie A.
    [J]. JOURNAL OF ALZHEIMERS DISEASE, 2018, 64 : S161 - S189
  • [7] C9orf72 suppresses systemic and neural inflammation induced by gut bacteria
    Burberry, Aaron
    Wells, Michael F.
    Limone, Francesco
    Couto, Alexander
    Smith, Kevin S.
    Keaney, James
    Gillet, Gaelle
    van Gastel, Nick
    Wang Jin-Yuan
    Pietilainen, Olli
    Qian Menglu
    Eggan, Pierce
    Cantrell, Christopher
    Mok, Joanie
    Kadiu, Irena
    Scadden, David T.
    Eggan, Kevin
    [J]. NATURE, 2020, 582 (7810) : 89 - +
  • [8] C9orf72 G4C2 repeat expansions in Alzheimer's disease and mild cognitive impairment
    Cacace, Rita
    Van Cauwenberghe, Caroline
    Bettens, Karolien
    Gijselinck, Ilse
    van der Zee, Julie
    Engelborghs, Sebastiaan
    Vandenbulcke, Mathieu
    Van Dongen, Jasper
    Baumer, Veerle
    Dillen, Lubina
    Mattheijssens, Maria
    Peeters, Karin
    Cruts, Marc
    Vandenberghe, Rik
    De Deyn, Peter P.
    Van Broeckhoven, Christine
    Sleegers, Kristel
    [J]. NEUROBIOLOGY OF AGING, 2013, 34 (06) : 1712.e1 - 1712.e7
  • [9] Expanding the Spectrum of Movement Disorders Associated With C9orf72 Hexanucleotide Expansions
    Estevez-Fraga, Carlos
    Magrinelli, Francesca
    Moss, Davina Hensman
    Mulroy, Eoin
    Di Lazzaro, Giulia
    Latorre, Anna
    Mackenzie, Melissa
    Houlden, Henry
    Tabrizi, Sarah J.
    Bhatia, Kailash P.
    [J]. NEUROLOGY-GENETICS, 2021, 7 (02)
  • [10] Genome-wide association study and functional validation implicates JADE1 in tauopathy
    Farrell, Kurt
    Kim, SoongHo
    Han, Natalia
    Iida, Megan A.
    Gonzalez, Elias M.
    Otero-Garcia, Marcos
    Walker, Jamie M.
    Richardson, Timothy E.
    Renton, Alan E.
    Andrews, Shea J.
    Fulton-Howard, Brian
    Humphrey, Jack
    Vialle, Ricardo A.
    Bowles, Kathryn R.
    Lopes, Katia de Paiva
    Whitney, Kristen
    Dangoor, Diana K.
    Walsh, Hadley
    Marcora, Edoardo
    Hefti, Marco M.
    Casella, Alicia
    Sissoko, Cheick T.
    Kapoor, Manav
    Novikova, Gloriia
    Udine, Evan
    Wong, Garrett
    Tang, Weijing
    Bhangale, Tushar
    Hunkapiller, Julie
    Ayalon, Gai
    Graham, Robert R.
    Cherry, Jonathan D.
    Cortes, Etty P.
    Borukov, Valeriy Y.
    McKee, Ann C.
    Stein, Thor D.
    Vonsattel, Jean-Paul
    Teich, Andy F.
    Gearing, Marla
    Glass, Jonathan
    Troncoso, Juan C.
    Frosch, Matthew P.
    Hyman, Bradley T.
    Dickson, Dennis W.
    Murray, Melissa E.
    Attems, Johannes
    Flanagan, Margaret E.
    Mao, Qinwen
    Mesulam, M-Marsel
    Weintraub, Sandra
    [J]. ACTA NEUROPATHOLOGICA, 2022, 143 (01) : 33 - 53