Mapping cancer biology in space: applications and perspectives on spatial omics for oncology

被引:10
作者
Lee, Sumin [1 ,2 ]
Kim, Gyeongjun [3 ]
Lee, Jinyoung [4 ]
Lee, Amos C. [2 ,5 ]
Kwon, Sunghoon [1 ,3 ,5 ,6 ,7 ]
机构
[1] Seoul Natl Univ, Dept Elect & Comp Engn, Seoul 08826, South Korea
[2] Meteor Biotech Co Ltd, Seoul 08826, South Korea
[3] Seoul Natl Univ, Interdisciplinary Program Bioengn, Seoul 08826, South Korea
[4] Univ Toronto, Div Engn Sci, Toronto, ON M5S 3H6, Canada
[5] Seoul Natl Univ, Biomax Inst, Seoul 08826, South Korea
[6] Seoul Natl Univ, Inst Entrepreneurial BioConvergence, Seoul 08826, South Korea
[7] Seoul Natl Univ, Canc Res Inst, Coll Med, Seoul 03080, South Korea
关键词
IN-SITU HYBRIDIZATION; GENOME-WIDE EXPRESSION; SINGLE-CELL; GENE-EXPRESSION; BREAST-CANCER; ALLELIC LOSS; LUNG ADENOCARCINOMA; COLORECTAL-CANCER; DNA METHYLATION; RNA-ANALYSIS;
D O I
10.1186/s12943-024-01941-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Technologies to decipher cellular biology, such as bulk sequencing technologies and single-cell sequencing technologies, have greatly assisted novel findings in tumor biology. Recent findings in tumor biology suggest that tumors construct architectures that influence the underlying cancerous mechanisms. Increasing research has reported novel techniques to map the tissue in a spatial context or targeted sampling-based characterization and has introduced such technologies to solve oncology regarding tumor heterogeneity, tumor microenvironment, and spatially located biomarkers. In this study, we address spatial technologies that can delineate the omics profile in a spatial context, novel findings discovered via spatial technologies in oncology, and suggest perspectives regarding therapeutic approaches and further technological developments.
引用
收藏
页数:27
相关论文
共 224 条
[31]   Development and validation of a novel clinical fluorescence in situ hybridization assay to detect JAK2 and PD-L1 amplification: a fluorescence in situ hybridization assay for JAK2 and PD-L1 amplification [J].
Chen, Meixuan ;
Andreozzi, Mariacarla ;
Pockaj, Barbara ;
Barrett, Michael T. ;
Ocal, Idris Tolgay ;
McCullough, Ann E. ;
Linnaus, Maria E. ;
Chang, James M. ;
Yearley, Jennifer H. ;
Annamalai, Lakshmanan ;
Anderson, Karen S. .
MODERN PATHOLOGY, 2017, 30 (11) :1516-1526
[32]   Histologically resolved multiomics enables precise molecular profiling of human intratumor heterogeneity [J].
Chen, Tao ;
Cao, Chen ;
Zhang, Jianyun ;
Streets, Aaron ;
Li, Tiejun ;
Huang, Yanyi .
PLOS BIOLOGY, 2022, 20 (07)
[33]  
Cheng L, 2004, ARCH PATHOL LAB MED, V128, P187
[34]   Precise microdissection of human bladder carcinomas reveals divergent tumor subclones in the same tumor [J].
Cheng, L ;
Gu, J ;
Ulbright, TM ;
MacLennan, GT ;
Sweeney, CJ ;
Zhang, SB ;
Sanchez, K ;
Koch, MO ;
Eble, JN .
CANCER, 2002, 94 (01) :104-110
[35]  
Cheng L, 2001, ARCH PATHOL LAB MED, V125, P1197
[36]   EGFR and KRAS mutation analysis in cytologic samples of lung adenocarcinoma enabled by laser capture microdissection [J].
Chowdhuri, Sinchita Roy ;
Xi, Liqiang ;
Trinh Hoc-Tran Pham ;
Hanson, Jeffrey ;
Rodriguez-Canales, Jaime ;
Berman, Arlene ;
Rajan, Arun ;
Giaccone, Giuseppe ;
Emmert-Buck, Michael ;
Raffeld, Mark ;
Filie, Armando C. .
MODERN PATHOLOGY, 2012, 25 (04) :548-555
[37]   Spatiotemporal analysis of glioma heterogeneity reveals COL1A1 as an actionable target to disrupt tumor progression [J].
Comba, Andrea ;
Faisal, Syed M. ;
Dunn, Patrick J. ;
Argento, Anna E. ;
Hollon, Todd C. ;
Al-Holou, Wajd N. ;
Varela, Maria Luisa ;
Zamler, Daniel B. ;
Quass, Gunnar L. ;
Apostolides, Pierre F. ;
Abel, Clifford, II ;
Brown, Christine E. ;
Kish, Phillip E. ;
Kahana, Alon ;
Kleer, Celina G. ;
Motsch, Sebastien ;
Castro, Maria G. ;
Lowenstein, Pedro R. .
NATURE COMMUNICATIONS, 2022, 13 (01)
[38]   Tinctorial methods in histology [J].
Cook, HC .
JOURNAL OF CLINICAL PATHOLOGY, 1997, 50 (09) :716-720
[39]  
Coons AH, 1941, P SOC EXP BIOL MED, V47, P200, DOI 10.3181/00379727-47-13084P
[40]  
Cowherd Stacy M, 2004, Clin Breast Cancer, V5, P385, DOI 10.3816/CBC.2004.n.046