lateral flow immunoassay;
data processing;
point of care testing;
deep learning;
convolutional neural network;
U-Net model;
CARE TESTING POCT;
PEAK DETECTION;
DIAGNOSIS;
NETWORK;
D O I:
10.3389/fncom.2023.1091180
中图分类号:
Q [生物科学];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
Lateral flow immunoassay (LFIA) is an important detection method in vitro diagnosis, which has been widely used in medical industry. It is difficult to analyze all peak shapes through classical methods due to the complexity of LFIA. Classical methods are generally some peak-finding methods, which cannot distinguish the difference between normal peak and interference or noise peak, and it is also difficult for them to find the weak peak. Here, a novel method based on deep learning was proposed, which can effectively solve these problems. The method had two steps. The first was to classify the data by a classification model and screen out double-peaks data, and second was to realize segmentation of the integral regions through an improved U-Net segmentation model. After training, the accuracy of the classification model for validation set was 99.59%, and using combined loss function (WBCE + DSC), intersection over union (IoU) value of segmentation model for validation set was 0.9680. This method was used in a hand-held fluorescence immunochromatography analyzer designed independently by our team. A Ferritin standard curve was created, and the T/C value correlated well with standard concentrations in the range of 0-500 ng/ml (R-2 = 0.9986). The coefficients of variation (CVs) were <= 1.37%. The recovery rate ranged from 96.37 to 105.07%. Interference or noise peaks are the biggest obstacle in the use of hand-held instruments, and often lead to peak-finding errors. Due to the changeable and flexible use environment of hand-held devices, it is not convenient to provide any technical support. This method greatly reduced the failure rate of peak finding, which can reduce the customer's need for instrument technical support. This study provided a new direction for the data-processing of point-of-care testing (POCT) instruments based on LFIA.
机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Xing, Ke-Yu
Shan, Shan
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机构:
Jiangxi Normal Univ, Coll Life Sci, Nanchang 330022, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Shan, Shan
Liu, Dao-Feng
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机构:
Jiangxi Prov Ctr Dis Control & Prevent, Nanchang 330029, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Liu, Dao-Feng
Lai, Wei-Hua
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机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
机构:
Luxor Sci, Greenville, SC USABrigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Contella, Lindsey
Snyder, Marion L.
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机构:
Luxor Sci, Greenville, SC USABrigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Snyder, Marion L.
Kang, Phillip
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机构:
Brigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USABrigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Kang, Phillip
Tolan, Nicole V.
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机构:
Brigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USABrigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Tolan, Nicole V.
Melanson, Stacy E. F.
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机构:
Brigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
Harvard Med Sch, Boston, MA 02115 USABrigham & Womens Hosp, Dept Pathol, 75 Francis St, Boston, MA 02115 USA
机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Ren Mei Ling
Chen Xue Lan
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h-index: 0
机构:
Jiangxi Normal Univ, Key Lab Funct Small Organ Mol, Minist Educ, Nanchang 330022, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Chen Xue Lan
Li Chao Hui
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h-index: 0
机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Li Chao Hui
Xu Bo
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h-index: 0
机构:
Wuxi Zodoboer Biotech Co Ltd, Wuxi 214174, Jiangsu, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Xu Bo
Liu Wen Juan
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h-index: 0
机构:
Wuxi Zodoboer Biotech Co Ltd, Wuxi 214174, Jiangsu, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Liu Wen Juan
Xu Heng Yi
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h-index: 0
机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China
Xu Heng Yi
Xiong Yong Hua
论文数: 0引用数: 0
h-index: 0
机构:
Nanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R ChinaNanchang Univ, State Key Lab Food Sci & Technol, Nanchang 330047, Jiangxi, Peoples R China