Single-cell and spatial transcriptomics in endocrine research

被引:3
作者
Matsumoto, Ryusaku [1 ,4 ]
Yamamoto, Takuya [1 ,2 ,3 ]
机构
[1] Kyoto Univ, Ctr iPS Cell Res & Applicat, Kyoto 6068507, Japan
[2] Kyoto Univ, Inst Adv Study Human Biol ASHBi, Kyoto 6068501, Japan
[3] RIKEN Ctr Adv Intelligence Project AIP, Med Risk Avoidance Based iPS Cells Team, Tokyo 1030027, Japan
[4] Kyoto Univ, Ctr iPS Cell Res & Applicat, 53 Kawahara Cho,Sakyo Ku, Kyoto 6068507, Japan
关键词
Single-cell transcriptomics; Spatial transcriptomics; Cellular heterogeneity; Intercellular communication; Endocrine organ; GENOME-WIDE EXPRESSION; GENE-EXPRESSION; GLUCAGON-SECRETION; RNA; SEQ; REVEALS; DNA; STEROIDOGENESIS; DIFFERENTIATION; VISUALIZATION;
D O I
10.1507/endocrj.EJ23-0457
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Accumulating evidence suggests that cellular heterogeneity in organs and cell-cell and tissue-tissue interactions are crucial for maintaining physical homeostasis and disease progression. Endocrine organs also exhibit cellular heterogeneity and comprise multiple cell types. For instance, the pituitary gland comprises five types of pituitary hormone-producing cells as well as non-hormone-producing supporting cells, such as fibroblasts, endothelial cells, and folliculostellate cells. However, the functional roles of the interactions between hormone-producing and non-producing cells in the pituitary gland remain incompletely understood. Over the past decade, emerging technologies such as single-cell and spatial transcriptomics have provided excellent tools for studying cellular heterogeneity and their interactions; however, the application of these technologies in endocrine research remains limited. This review provides an overview of these technologies and discusses their strengths and limitations. Additionally, we also summarize the potential future applications of single-cell and spatial transcriptomics in the study of endocrine organs and their disorders.
引用
收藏
页码:101 / 118
页数:18
相关论文
共 126 条
[1]   SpaGE: Spatial Gene Enhancement using scRNA-seq [J].
Abdelaal, Tamim ;
Mourragui, Soufiane ;
Mahfouz, Ahmed ;
Reinders, Marcel J. T. .
NUCLEIC ACIDS RESEARCH, 2020, 48 (18) :E107-E107
[2]   Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems [J].
Alon, Shahar ;
Goodwin, Daniel R. ;
Sinha, Anubhav ;
Wassie, Asmamaw T. ;
Chen, Fei ;
Daugharthy, Evan R. ;
Bando, Yosuke ;
Kajita, Atsushi ;
Xue, Andrew G. ;
Marrett, Karl ;
Prior, Robert ;
Cui, Yi ;
Payne, Andrew C. ;
Yao, Chun-Chen ;
Suk, Ho-Jun ;
Wang, Ru ;
Yu, Chih-Chieh ;
Tillberg, Paul ;
Reginato, Paul ;
Pak, Nikita ;
Liu, Songlei ;
Punthambaker, Sukanya ;
Iyer, Eswar P. R. ;
Kohman, Richie E. ;
Miller, Jeremy A. ;
Lein, Ed S. ;
Lako, Ana ;
Cullen, Nicole ;
Rodig, Scott ;
Helvie, Karla ;
Abravanel, Daniel L. ;
Wagle, Nikhil ;
Johnson, Bruce E. ;
Klughammer, Johanna ;
Slyper, Michal ;
Waldman, Julia ;
Jane-Valbuena, Judit ;
Rozenblatt-Rosen, Orit ;
Regev, Aviv ;
Church, George M. ;
Marblestone, Adam H. ;
Boyden, Edward S. .
SCIENCE, 2021, 371 (6528) :481-+
[3]   Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography [J].
Andersson, Alma ;
Bergenstrahle, Joseph ;
Asp, Michaela ;
Bergenstrahle, Ludvig ;
Jurek, Aleksandra ;
Fernandez Navarro, Jose ;
Lundeberg, Joakim .
COMMUNICATIONS BIOLOGY, 2020, 3 (01)
[4]   Identification of novel pathways involved in the pathogenesis of human adamantinomatous craniopharyngioma [J].
Andoniadou, Cynthia L. ;
Gaston-Massuet, Carles ;
Reddy, Rukmini ;
Schneider, Ralph P. ;
Blasco, Maria A. ;
Le Tissier, Paul ;
Jacques, Thomas S. ;
Pevny, Larysa H. ;
Dattani, Mehul T. ;
Martinez-Barbera, Juan Pedro .
ACTA NEUROPATHOLOGICA, 2012, 124 (02) :259-271
[5]   Sox2+ Stem/Progenitor Cells in the Adult Mouse Pituitary Support Organ Homeostasis and Have Tumor-Inducing Potential [J].
Andoniadou, Cynthia Lilian ;
Matsushima, Danielle ;
Gharavy, Seyedeh Neda Mousavy ;
Signore, Massimo ;
Mackintosh, Albert Ian ;
Schaeffer, Marie ;
Gaston-Massuet, Carles ;
Mollard, Patrice ;
Jacques, Thomas Stanley ;
Le Tissier, Paul ;
Dattani, Mehul Tulsidas ;
Pevny, Larysa Halyna ;
Martinez-Barbera, Juan Pedro .
CELL STEM CELL, 2013, 13 (04) :433-445
[6]   Method of the Year 2019: Single-cell multimodal omics [J].
不详 .
NATURE METHODS, 2020, 17 (01) :1-1
[7]   The cytogenesis and pathogenesis of pituitary adenomas [J].
Asa, SL ;
Ezzat, S .
ENDOCRINE REVIEWS, 1998, 19 (06) :798-827
[8]   A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart [J].
Asp, Michaela ;
Giacomello, Stefania ;
Larsson, Ludvig ;
Wu, Chenglin ;
Furth, Daniel ;
Qian, Xiaoyan ;
Wardell, Eva ;
Custodio, Joaquin ;
Reimegard, Johan ;
Salmen, Fredrik ;
Osterholm, Cecilia ;
Stahl, Patrik L. ;
Sundstrom, Erik ;
Akesson, Elisabet ;
Bergmann, Olaf ;
Bienko, Magda ;
Mansson-Broberg, Agneta ;
Nilsson, Mats ;
Sylven, Christer ;
Lundeberg, Joakim .
CELL, 2019, 179 (07) :1647-+
[9]   Adrenal Hormone Interactions and Metabolism: A Single Sample Multi-Omics Approach [J].
Bechmann, Nicole ;
Watts, Deepika ;
Steenblock, Charlotte ;
Wallace, Paal William ;
Schurmann, Annette ;
Bornstein, Stefan R. ;
Wielockx, Ben ;
Eisenhofer, Graeme ;
Peitzsch, Mirko .
HORMONE AND METABOLIC RESEARCH, 2021, 53 (05) :326-334
[10]   Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity [J].
Berglund, Emelie ;
Maaskola, Jonas ;
Schultz, Niklas ;
Friedrich, Stefanie ;
Marklund, Maja ;
Bergenstrahle, Joseph ;
Tarish, Firas ;
Tanoglidi, Anna ;
Vickovic, Sanja ;
Larsson, Ludvig ;
Salmen, Fredrik ;
Ogris, Christoph ;
Wallenborg, Karolina ;
Lagergren, Jens ;
Stahl, Patrik ;
Sonnhammer, Erik ;
Helleday, Thomas ;
Lundeberg, Joakim .
NATURE COMMUNICATIONS, 2018, 9