A new ferroptosis-related genetic mutation risk model predicts the prognosis of skin cutaneous melanoma

被引:1
|
作者
He, Jia [1 ,2 ]
Huang, Wenting [1 ]
Li, Xinxin [1 ]
Wang, Jingru [2 ]
Nie, Yaxing [3 ]
Li, Guiqiang [2 ]
Wang, Xiaoxiang [2 ]
Cao, Huili [1 ]
Chen, Xiaodong [2 ]
Wang, Xusheng [1 ]
机构
[1] Sun Yat Sen Univ, Sch Pharmaceut Sci, Guangzhou, Peoples R China
[2] First Peoples Hosp Foshan, Dept Burn Surg, Foshan, Peoples R China
[3] Chinese Acad Sci, Inst Pasteur Shanghai, CAS Key Lab Mol Virol & Immunol, Shanghai, Peoples R China
关键词
skin cutaneous melanoma; ferroptosis; genetic mutation; single nucleotide variant; prognosis; tumor immunity; REGULATORY T-CELLS; METASTATIC MELANOMA; MICROSATELLITE INSTABILITY; SURVIVAL PREDICTION; PD-1; BLOCKADE; CANCER; SIGNATURE; BRAF; IMMUNOTHERAPY; BURDEN;
D O I
10.3389/fgene.2022.988909
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Ferroptosis is an iron-dependent cell death mode and closely linked to various cancers, including skin cutaneous melanoma (SKCM). Although attempts have been made to construct ferroptosis-related gene (FRG) signatures for predicting the prognosis of SKCM, the prognostic impact of ferroptosis-related genetic mutations in SKCM remains lacking. This study aims to develop a prediction model to explain the relationship between ferroptosis-related genetic mutations and clinical outcomes of SKCM patients and to explore the potential value of ferroptosis in SKCM treatment. Methods: FRGs which significantly correlated with the prognosis of SKCM were firstly screened based on their single-nucleotide variant (SNV) status by univariate Cox regression analysis. Subsequently, the least absolute shrinkage and selection operator (LASSO) and Cox regressions were performed to construct a new ferroptosis-related genetic mutation risk (FerrGR) model for predicting the prognosis of SKCM. We then illustrate the survival and receiver operating characteristic (ROC) curves to evaluate the predictive power of the FerrGR model. Moreover, independent prognostic factors, genomic and clinical characteristics, immunotherapy, immune infiltration, and sensitive drugs were compared between high-and low-FerrGR groups. Results: The FerrGR model was developed with a good performance on survival and ROC analysis. It was a robust independent prognostic indicator and followed a nomogram constructed to predict prognostic outcomes for SKCM patients. Besides, FerrGR combined with tumor mutational burden (TMB) or MSI (microsatellite instability) was considered as a combined biomarker for immunotherapy response. The high FerrGR group patients were associated with an inhibitory immune microenvironment. Furthermore, potential drugs target to high FerrGR samples were predicted. Conclusion: The FerrGR model is valuable to predict prognosis and immunotherapy in SKCM patients. It offers a novel therapeutic option for SKCM.
引用
收藏
页数:15
相关论文
共 50 条
  • [31] A promising anoikis-related prognostic signature predicts prognosis of skin cutaneous melanoma
    Zhanghui Yue
    Dan Wang
    Xuemei Li
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 17757 - 17770
  • [32] Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma
    Shuai Ping
    Ruining Gong
    Ke Lei
    Gong Qing
    Guangheng Zhang
    Jianghai Chen
    Discover Oncology, 13
  • [33] Development and validation of a ferroptosis-related lncRNAs signature to predict prognosis and microenvironment for melanoma
    Ping, Shuai
    Gong, Ruining
    Lei, Ke
    Qing, Gong
    Zhang, Guangheng
    Chen, Jianghai
    DISCOVER ONCOLOGY, 2022, 13 (01)
  • [34] Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
    Li, Hongyu
    Zhang, Xiliu
    Yi, Chen
    He, Yi
    Chen, Xun
    Zhao, Wei
    Yu, Dongsheng
    BMC CANCER, 2021, 21 (01)
  • [35] Expression of ferroptosis-related gene correlates with immune microenvironment and predicts prognosis in gastric cancer
    Song, Siyuan
    Shu, Peng
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [36] Expression of ferroptosis-related gene correlates with immune microenvironment and predicts prognosis in gastric cancer
    Siyuan Song
    Peng Shu
    Scientific Reports, 12
  • [37] Ferroptosis-related gene signature predicts prognosis in kidney renal papillary cell carcinoma
    Yin, Haiying
    Lin, Mei
    Liang, Shaoying
    Wei, Meijuan
    Huang, Cuiting
    Qin, Fengfei
    Nong, Jiejin
    Zeng, Xianchang
    Nong, Caimei
    Qin, Houji
    FRONTIERS IN ONCOLOGY, 2022, 12
  • [38] Ferroptosis-related gene signature associates with immunity and predicts prognosis accurately in patients with osteosarcoma
    Lei, Ting
    Qian, Hu
    Lei, Pengfei
    Hu, Yihe
    CANCER SCIENCE, 2021, 112 (11) : 4785 - 4798
  • [39] Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
    Hongyu Li
    Xiliu Zhang
    Chen Yi
    Yi He
    Xun Chen
    Wei Zhao
    Dongsheng Yu
    BMC Cancer, 21
  • [40] Construction and validation of a novel prognostic signature for cutaneous melanoma based on ferroptosis-related genes
    Guo, Wenna
    Wang, Xue
    Zhang, Yanting
    Liu, Hongtao
    Ma, Shanshan
    Guan, Fangxia
    HELIYON, 2023, 9 (05)