Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA

被引：22

作者：

Barouillet, Cecilia ^{[1
,2
]}

Monchamp, Marie-Eve ^{[3
,4
]}

Bertilsson, Stefan ^{[5
]}

Brasell, Katie ^{[6
]}

Domaizon, Isabelle ^{[1
,2
]}

Epp, Laura S. ^{[7
]}

Ibrahim, Anan ^{[8
]}

Mejbel, Hebah ^{[9
]}

Nwosu, Ebuka Canisius ^{[10
]}

Pearman, John K. ^{[6
]}

Picard, Mailys ^{[6
]}

Thomson-Laing, Georgia ^{[6
]}

Tsugeki, Narumi ^{[11
]}

Von Eggers, Jordan ^{[12
]}

Gregory-Eaves, Irene ^{[3
,4
]}

Pick, Frances

Wood, Susanna A. ^{[6
]}

Capo, Eric ^{[5
]}

机构：

[1] Univ Savoie Mont Blanc, INRAE, CARRTEL, F-74200 Thonon Les Bains, France

[2] UMR CARRTEL, Pole R&D ECLA, Thonon Les Bains, France

[3] McGill Univ, Dept Biol, Quebec City, PQ, Canada

[4] Grp Rech Interuniv Limnol GRIL, Quebec City, PQ, Canada

[5] Swedish Univ Agr Sci, Dept Aquat Sci & Assessment, S-75007 Uppsala, Sweden

[6] Cawthron Inst, Coastal & Freshwater Grp, Nelson, New Zealand

[7] Univ Konstanz, Limnol Inst, Dept Biol, Constance, Germany

[8] Leibniz Inst Naturstoff Forsch & Infektionsbiol Ha, Jena, Germany

[9] Univ Ottawa, Ctr Adv Res Environm Genom, Ottawa, ON, Canada

[10] Sect Geomicrobiol, GFZ German Res Ctr Geosci, Potsdam, Germany

[11] Matsuyama Univ, Fac Law, Matsuyama, Japan

[12] Univ Wyoming, Dept Geol & Geophys, Laramie, WY USA

来源：

FRESHWATER BIOLOGY | 2023年 / 68卷 / 11期

关键词：

anthropogenic stressors; climate change; eutrophication; invasive species; sedimentary DNA; COMMUNITY STRUCTURE; CLIMATE-CHANGE; EGG-BANK; PALEOLIMNOLOGICAL EVIDENCE; SHALLOW LAKES; ANCIENT DNA; FOOD-WEB; CYANOBACTERIA; DIVERSITY; DYNAMICS;

D O I：

10.1111/fwb.14027

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

Analyses of sedimentary DNA (sedDNA) have increased exponentially over the last decade and hold great potential to study the effects of anthropogenic stressors on lake biota over time. Herein, we synthesise the literature that has applied a sedDNA approach to track historical changes in lake biodiversity in response to anthropogenic impacts, with an emphasis on the past c. 200 years. We identified the following research themes that are of particular relevance: (1) eutrophication and climate change as key drivers of limnetic communities; (2) increasing homogenisation of limnetic communities across large spatial scales; and (3) the dynamics and effects of invasive species as traced in lake sediment archives. Altogether, this review highlights the potential of sedDNA to draw a more comprehensive picture of the response of lake biota to anthropogenic stressors, opening up new avenues in the field of paleoecology by unrevealing a hidden historical biodiversity, building new paleo-indicators, and reflecting either taxonomic or functional attributes. Broadly, sedDNA analyses provide new perspectives that can inform ecosystem management, conservation, and restoration by offering an approach to measure ecological integrity and vulnerability, as well as ecosystem functioning.

引用

页码：1799 / 1817

页数：19

共 165 条

[101] Evaluating sedimentary DNA for tracing changes in cyanobacteria dynamics from sediments spanning the last 350 years of Lake Tiefer See, NE Germany [J].

Nwosu, Ebuka C. ;

Brauer, Achim ;

Kaiser, Jerome ;

Horn, Fabian ;

Wagner, Dirk ;

Liebner, Susanne .

JOURNAL OF PALEOLIMNOLOGY, 2021, 66 (03) :279-296

[102] Rapid and highly variable warming of lake surface waters around the globe [J].

O'Reilly, Catherine M. ;

Sharma, Sapna ;

Gray, Derek K. ;

Hampton, Stephanie E. ;

Read, Jordan S. ;

Rowley, Rex J. ;

Schneider, Philipp ;

Lenters, John D. ;

McIntyre, Peter B. ;

Kraemer, Benjamin M. ;

Weyhenmeyer, Gesa A. ;

Straile, Dietmar ;

Dong, Bo ;

Adrian, Rita ;

Allan, Mathew G. ;

Anneville, Orlane ;

Arvola, Lauri ;

Austin, Jay ;

Bailey, John L. ;

Baron, Jill S. ;

Brookes, Justin D. ;

de Eyto, Elvira ;

Dokulil, Martin T. ;

Hamilton, David P. ;

Havens, Karl ;

Hetherington, Amy L. ;

Higgins, Scott N. ;

Hook, Simon ;

Izmest'eva, Lyubov R. ;

Joehnk, Klaus D. ;

Kangur, Kulli ;

Kasprzak, Peter ;

Kumagai, Michio ;

Kuusisto, Esko ;

Leshkevich, George ;

Livingstone, David M. ;

MacIntyre, Sally ;

May, Linda ;

Melack, John M. ;

Mueller-Navarra, Doerthe C. ;

Naumenko, Mikhail ;

Noges, Peeter ;

Noges, Tiina ;

North, Ryan P. ;

Plisnier, Pierre-Denis ;

Rigosi, Anna ;

Rimmer, Alon ;

Rogora, Michela ;

Rudstam, Lars G. ;

Rusak, James A. .

GEOPHYSICAL RESEARCH LETTERS, 2015, 42 (24) :10773-10781

[103] Protistan diversity in a permanently stratified meromictic lake (Lake Alatsee, SW Germany) [J].

Oikonomou, Andreas ;

Filker, Sabine ;

Breiner, Hans-Werner ;

Stoeck, Thorsten .

ENVIRONMENTAL MICROBIOLOGY, 2015, 17 (06) :2144-2157

[104] Estimating species colonization dates using DNA in lake sediment [J].

Olajos, Fredrik ;

Bokma, Folmer ;

Bartels, Pia ;

Myrstener, Erik ;

Rydberg, Johan ;

Ohlund, Gunnar ;

Bindler, Richard ;

Wang, Xiao-Ru ;

Zale, Rolf ;

Englund, Goran .

METHODS IN ECOLOGY AND EVOLUTION, 2018, 9 (03) :535-543

[105] Use and misuse in the application of the phytoplankton functional classification: a critical review with updates [J].

Padisak, Judit ;

Crossetti, Luciane O. ;

Naselli-Flores, Luigi .

HYDROBIOLOGIA, 2009, 621 :1-19

[106] Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls [J].

Paerl, Hans W. ;

Otten, Timothy G. .

MICROBIAL ECOLOGY, 2013, 65 (04) :995-1010

[107] Climate change: Links to global expansion of harmful cyanobacteria [J].

Paerl, Hans W. ;

Paul, Valerie J. .

WATER RESEARCH, 2012, 46 (05) :1349-1363

[108] Temporal trends in cyanobacteria revealed through DNA and pigment analyses of temperate lake sediment cores [J].

Pal, S. ;

Gregory-Eaves, I. ;

Pick, F. R. .

JOURNAL OF PALEOLIMNOLOGY, 2015, 54 (01) :87-101

[109] Environmental drivers of taxonomic and functional variation in zooplankton diversity and composition in freshwater lakes across Canadian continental watersheds [J].

Paquette, Cindy ;

Gregory-Eaves, Irene ;

Beisner, Beatrix E. .

LIMNOLOGY AND OCEANOGRAPHY, 2022, 67 (05) :1081-1097

[110] A bacterial index to estimate lake trophic level: National scale validation [J].

Pearman, John K. ;

Wood, Susanna A. ;

Vandergoes, Marcus J. ;

Atalah, Javier ;

Waters, Sean ;

Adamson, Janet ;

Thomson-Laing, Georgia ;

Thompson, Lucy ;

Howarth, Jamie D. ;

Hamilton, David P. ;

Pochon, Xavier ;

Biessy, Laura ;

Brasell, Katie A. ;

Dahl, Jenny ;

Ellison, Riki ;

Fitzsimons, Sean J. ;

Gard, Henry ;

Gerrard, Tania ;

Gregersen, Rose ;

Holloway, McKayla ;

Li, Xun ;

Kelly, David J. ;

Martin, Reece ;

McFarlane, Kiely ;

McKay, Nicholas P. ;

Moody, Adelaine ;

Moy, Chris M. ;

Naeher, Sebastian ;

Newnham, Rewi ;

Parai, Russleigh ;

Picard, Mailys ;

Puddick, Jonathan ;

Rees, Andrew B. H. ;

Reyes, Lizette ;

Schallenberg, Marc ;

Shepherd, Claire ;

Short, Julia ;

Simon, Kevin S. ;

Steiner, Konstanze ;

Sunde, Charlotte ;

Terezow, Marianna ;

Tibby, John .

SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 812

← 6 7 8 9 10 11 12 13 14 15 →