EpiGNN: Exploring Spatial Transmission with Graph Neural Network for Regional Epidemic Forecasting

被引:7
作者
Xie, Feng [1 ]
Zhang, Zhong [1 ]
Li, Liang [1 ]
Zhou, Bin [1 ]
Tan, Yusong [1 ]
机构
[1] Natl Univ Def Technol, Coll Comp, Changsha, Peoples R China
来源
MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, ECML PKDD 2022, PT VI | 2023年 / 13718卷
基金
中国国家自然科学基金;
关键词
Epidemic forecasting; Graph neural network; Spatial transmission modeling; Public health informatics; ATTENTION;
D O I
10.1007/978-3-031-26422-1_29
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Epidemic forecasting is the key to effective control of epidemic transmission and helps the world mitigate the crisis that threatens public health. To better understand the transmission and evolution of epidemics, we propose EpiGNN, a graph neural network-based model for epidemic forecasting. Specifically, we design a transmission risk encoding module to characterize local and global spatial effects of regions in epidemic processes and incorporate them into the model. Meanwhile, we develop a Region-Aware Graph Learner (RAGL) that takes transmission risk, geographical dependencies, and temporal information into account to better explore spatial-temporal dependencies and makes regions aware of related regions' epidemic situations. The RAGL can also combine with external resources, such as human mobility, to further improve prediction performance. Comprehensive experiments on five real-world epidemicrelated datasets (including influenza and COVID-19) demonstrate the effectiveness of our proposed method and show that EpiGNN outperforms state-of-the-art baselines by 9.48% in RMSE.
引用
收藏
页码:469 / 485
页数:17
相关论文
共 21 条
  • [11] Panagopoulos G, 2021, AAAI CONF ARTIF INTE, V35, P4838
  • [12] Temporal pattern attention for multivariate time series forecasting
    Shih, Shun-Yao
    Sun, Fan-Keng
    Lee, Hung-yi
    [J]. MACHINE LEARNING, 2019, 108 (8-9) : 1421 - 1441
  • [13] Vaswani A, 2017, ADV NEUR IN, V30
  • [14] Dynamic Poisson Autoregression for Influenza-Like-Illness Case Count Prediction
    Wang, Zheng
    Chakraborty, Prithwish
    Mekaru, Sumiko R.
    Brownstein, John S.
    Ye, Jieping
    Ramakrishnan, Naren
    [J]. KDD'15: PROCEEDINGS OF THE 21ST ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING, 2015, : 1285 - 1294
  • [15] Early and Real-Time Detection of Seasonal Influenza Onset
    Won, Miguel
    Marques-Pita, Manuel
    Louro, Carlota
    Goncalves-Sa, Joana
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2017, 13 (02)
  • [16] Deep Learning for Epidemiological Predictions
    Wu, Yuexin
    Yang, Yiming
    Nishiura, Hiroshi
    Saitoh, Masaya
    [J]. ACM/SIGIR PROCEEDINGS 2018, 2018, : 1085 - 1088
  • [17] Wu ZH, 2019, Arxiv, DOI [arXiv:1906.00121, 10.48550/arXiv.1906.00121, DOI 10.48550/ARXIV.1906.00121]
  • [18] Connecting the Dots: Multivariate Time Series Forecasting with Graph Neural Networks
    Wu, Zonghan
    Pan, Shirui
    Long, Guodong
    Jiang, Jing
    Chang, Xiaojun
    Zhang, Chengqi
    [J]. KDD '20: PROCEEDINGS OF THE 26TH ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY & DATA MINING, 2020, : 753 - 763
  • [19] Yu B, 2018, Arxiv, DOI arXiv:1709.04875
  • [20] Time series forecasting using a hybrid ARIMA and neural network model
    Zhang, GP
    [J]. NEUROCOMPUTING, 2003, 50 : 159 - 175