Constructing a pollen proxy from low-cost Optical Particle Counter (OPC) data processed with Neural Networks and Random Forests

被引:13
作者
Mills, Sophie A. [1 ,2 ]
Bousiotis, Dimitrios [1 ]
Maya-Manzano, Jose M. [3 ,4 ]
Tummon, Fiona [5 ]
MacKenzie, A. Rob [1 ,2 ]
Pope, Francis D. [1 ,2 ]
机构
[1] Univ Birmingham, Sch Geog Earth & Environm Sci, Birmingham B15 2TT, England
[2] Univ Birmingham, Birmingham Inst Forest Res, Birmingham B15 2TT, England
[3] Tech Univ, Ctr Allergy & Environm ZAUM, German Ctr Lung Res DZL, Munich, Germany
[4] Helmholtz Ctr Munich, Munich, Germany
[5] Fed Off Meteorol & Climatol MeteoSwiss, Payerne, Switzerland
基金
英国自然环境研究理事会;
关键词
Aerobiology; Pollen; Automatic monitoring; Optical Particle Counter (OPC); Low-cost sensors; Machine learning; POSITIVE MATRIX FACTORIZATION; ICE NUCLEATING ABILITY; SUBPOLLEN PARTICLES; SOURCE APPORTIONMENT; BIRCH POLLEN; RELEASE; TEMPERATURE; PERFORMANCE; IMMERSION; TRANSPORT;
D O I
10.1016/j.scitotenv.2023.161969
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Pollen allergies affect a significant proportion of the global population, and this is expected to worsen in years to come. There is demand for the development of automated pollen monitoring systems. Low-cost Optical Particle Counters (OPCs) measure particulate matter and have attractive advantages of real-time high time resolution data and affordable costs. This study asks whether low-cost OPC sensors can be used for meaningful monitoring of airborne pollen. We employ a variety of methods, including supervised machine learning techniques, to construct pollen proxies from hourly-average OPC data and evaluate their performance, holding out 40 % of observations to test the proxies. The most successful methods are supervised machine learning Neural Network (NN) and Random Forest (RF) methods, trained from pollen concentrations collected from a Hirst-type sampler. These perform significantly better than using a simple particle size-filtered proxy or a Positive Matrix Factorisation (PMF) source apportionment pollen proxy. Twelve NN and RF models were developed to construct a pollen proxy, each varying by model type, input features and target variable. The results show that such models can construct useful information on pollen from OPC data. The best metrics achieved (Spearman correlation coefficient = 0.85, coefficient of determination = 0.67) were for the NN model constructing a Poaceae (grass) pollen proxy, based on particle size information, temperature, and relative humidity. Ability to distinguish high pollen events was evaluated using F1 Scores, a score reflecting the fraction of true positives with respect to false positives and false negatives, with promising results (F1 <= 0.83). Modelconstructed proxies demonstrated the ability to follow monthly and diurnal trends in pollen. We discuss the suitability of OPCs for monitoring pollen and offer advice for future progress. We demonstrate an attractive alternative for automated pollen monitoring that could provide valuable and timely information to the benefit of pollen allergy sufferers.
引用
收藏
页数:13
相关论文
共 68 条
  • [1] Abadi M., 2019, CoRR abs/1603.04467. arXiv: 1603 . 04467, DOI DOI 10.48550/ARXIV.1603.04467
  • [2] On the measurement uncertainty of Hirst-type volumetric pollen and spore samplers
    Adamov, Simon
    Lemonis, Natalie
    Clot, Bernard
    Crouzy, Benoit
    Gehrig, Regula
    Graber, Marie-Jose
    Sallin, Christine
    Tummon, Fiona
    [J]. AEROBIOLOGIA, 2024, 40 (01) : 77 - 91
  • [3] Potential contribution of distant sources to airborne Betula pollen levels in Northeastern Iberian Peninsula
    Alarcon, Marta
    Periago, Cristina
    Pino, David
    Mazon, Jordi
    del Carme Casas-Castillo, Maria
    Ho-Zhang, Jiang Ji
    De Linares, Concepcion
    Rodriguez-Sola, Raul
    Belmonte, Jordina
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 818
  • [4] Subpollen particles: Carriers of allergenic proteins and oxidases
    Bacsi, Attila
    Choudhury, Barun K.
    Dharajiya, Nilesh
    Sur, Sanjiv
    Boldogh, Istvan
    [J]. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2006, 118 (04) : 844 - 850
  • [5] Mass concentration measurements of autumn bioaerosol using low-cost sensors in a mature temperate woodland free-air carbon dioxide enrichment (FACE) experiment: investigating the role of meteorology and carbon dioxide levels
    Baird, Aileen B.
    Bannister, Edward J.
    MacKenzie, A. Robert
    Pope, Francis D.
    [J]. BIOGEOSCIENCES, 2022, 19 (10) : 2653 - 2669
  • [6] SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation
    Blewitt, Marnie E.
    Gendrel, Anne-Valerie
    Pang, Zhenyi
    Sparrow, Duncan B.
    Whitelaw, Nadia
    Craig, Jeffrey M.
    Apedaile, Anwyn
    Hilton, Douglas J.
    Dunwoodie, Sally L.
    Brockdorff, Neil
    Kay, Graham F.
    Whitelaw, Emma
    [J]. NATURE GENETICS, 2008, 40 (05) : 663 - 669
  • [7] A study on the performance of low-cost sensors for source apportionment at an urban background site
    Bousiotis, Dimitrios
    Beddows, David C. S.
    Singh, Ajit
    Haugen, Molly
    Diez, Sebastian
    Edwards, Pete M.
    Boies, Adam
    Harrison, Roy M.
    Pope, Francis D.
    [J]. ATMOSPHERIC MEASUREMENT TECHNIQUES, 2022, 15 (13) : 4047 - 4061
  • [8] Bradley R.S., 2015, PALEOCLIMATOLOGY, V3rd, P408, DOI [10.1016/B978-0-12-386913-5.00012-0, DOI 10.1016/B978-0-12-386913-5.00012-0]
  • [9] Isolation of subpollen particles (SPPs) of birch: SPPs are potential carriers of ice nucleating macromolecules
    Burkart, Julia
    Gratzl, Juergen
    Seifried, Teresa M.
    Bieber, Paul
    Grothe, Hinrich
    [J]. BIOGEOSCIENCES, 2021, 18 (20) : 5751 - 5765
  • [10] Pollen and spore monitoring in the world
    Buters, J. T. M.
    Antunes, C.
    Galveias, A.
    Bergmann, K. C.
    Thibaudon, M.
    Galan, C.
    Schmidt-Weber, C.
    Oteros, J.
    [J]. CLINICAL AND TRANSLATIONAL ALLERGY, 2018, 8