Selection and Evaluation of Reference Genes for RT-qPCR Analysis in Amorphophallus Konjac Based on Transcriptome Data

被引:4
作者
Liu, Yanli [1 ]
Zhang, Chengcheng [2 ]
Harijati, Nunung [3 ]
Diao, Ying [1 ]
Liu, Erxi [4 ]
Hu, Zhongli [1 ,2 ]
机构
[1] Wuhan Polytech Univ, Coll Life Sci & Technol, Wuhan 430023, Peoples R China
[2] Wuhan Univ, Coll Life Sci, Lotus Engn Res Ctr Hubei Prov, Wuhan 430072, Peoples R China
[3] Brawijaya Univ, Fac Math & Nat Sci, Dept Biol, Jl Vet, Malang 65145, Indonesia
[4] Enshi Acad Agr Sci, Konjac Inst, Enshi 445000, Peoples R China
关键词
Amorphophallus; reference genes; RT-qPCR; gene expression; HOUSEKEEPING GENES; ABIOTIC STRESS; PCR; NORMALIZATION; VALIDATION; EXPRESSION;
D O I
10.3390/genes14081513
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Combined with the Konjac transcriptome database of our laboratory and internal reference genes commonly used in plants, the eight candidate internal reference genes were screened and detected. They are the 25S ribosomal RNA gene (25S rRNA), 18S ribosomal RNA gene (18S rRNA), actin gene (ACT), glyceraldehyde-3-phosphate dehydrogenase gene (GAPDH), ubiquitin gene (UBQ), beta-tubulin gene (beta-TUB), eukaryotic elongation factor 1-ffgene(eEF-1 alpha), and eukaryotic translation initiation factor 4 beta-1 gene (eIF-4 alpha). The results of GeNorm, Normfinder, and BestKeeper were analyzed comprehensively. The data showed that the expression levels of 25S rRNA, 18S rRNA, and ACT at the reproductive periods, eEF-1 alpha and eIF-4 alpha at the nutritional periods, and eEF-1 alpha, UBQ, and ACT at different leaf developmental periods were stable. These identified and stable internal reference genes will provide the basis for the subsequent molecular biology-related studies of Konjac.
引用
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页数:12
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