An interactive murine single-cell atlas of the lung responses to radiation injury

被引:41
作者
Curras-Alonso, Sandra [1 ,2 ]
Soulier, Juliette [1 ,2 ]
Defard, Thomas [3 ,4 ,5 ,6 ]
Weber, Christian [6 ]
Heinrich, Sophie [2 ]
Laporte, Hugo [1 ,2 ]
Leboucher, Sophie [7 ]
Lameiras, Sonia [8 ]
Dutreix, Marie [2 ]
Favaudon, Vincent [2 ]
Massip, Florian [3 ,4 ,5 ]
Walter, Thomas [3 ,4 ,5 ]
Mueller, Florian [6 ]
Londono-Vallejo, Jose-Arturo [1 ,2 ]
Fouillade, Charles [2 ]
机构
[1] PSL Univ, Sorbonne Univ, CNRS, UMR 3244,Inst Curie, F-75005 Paris, France
[2] Univ Paris Saclay, PSL Univ, Ctr Univ, Inserm,CNRS,UMR 3347,U1021,Inst Curie, F-91405 Orsay, France
[3] PSL Univ, Mines Paris, Ctr Computat Biol CBIO, F-75006 Paris, France
[4] PSL Univ, Inst Curie, F-75005 Paris, France
[5] INSERM, U900, F-75005 Paris, France
[6] Univ Paris Cite, Inst Pasteur, Imaging & Modeling Unit, Paris, France
[7] Univ Paris Saclay, PSL Univ, Ctr Univ, CNRS,UMR 3348,Inst Curie, Orsay, France
[8] Inst Curie Genom Excellence ICGex Platform, Paris, France
关键词
MESENCHYMAL TRANSITION; PULMONARY; MECHANISMS; ACCUMULATION; MACROPHAGES;
D O I
10.1038/s41467-023-38134-z
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Radiation Induced Lung Injury (RILI) is one of the main limiting factors of thorax irradiation, which can induce acute pneumonitis as well as pulmonary fibrosis, the latter being a life-threatening condition. The order of cellular and molecular events in the progression towards fibrosis is key to the physiopathogenesis of the disease, yet their coordination in space and time remains largely unexplored. Here, we present an interactive murine single cell atlas of the lung response to irradiation, generated from C57BL6/J female mice. This tool opens the door for exploration of the spatio-temporal dynamics of the mechanisms that lead to radiation-induced pulmonary fibrosis. It depicts with unprecedented detail cell type-specific radiation-induced responses associated with either lung regeneration or the failure thereof. A better understanding of the mechanisms leading to lung fibrosis will help finding new therapeutic options that could improve patients' quality of life. Radiation damages the healthy lung and triggers severe side effects. Here the authors provide a single cell atlas of the lung responses to radiation injury to explore the spatio-temporal dynamics of the mechanisms leading to radio-induced pulmonary fibrosis.
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页数:16
相关论文
共 54 条
[1]   Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis [J].
Adams, Taylor S. ;
Schupp, Jonas C. ;
Poli, Sergio ;
Ayaub, Ehab A. ;
Neumark, Nir ;
Ahangari, Farida ;
Chu, Sarah G. ;
Raby, Benjamin A. ;
DeTullis, Giuseppe ;
Januszyk, Michael ;
Duan, Qiaonan ;
Arnett, Heather A. ;
Siddiqui, Asim ;
Washko, George R. ;
Homer, Robert ;
Yan, Xiting ;
Rosas, Ivan O. ;
Kaminski, Naftali .
SCIENCE ADVANCES, 2020, 6 (28)
[2]  
Aibar S, 2017, NAT METHODS, V14, P1083, DOI [10.1038/nmeth.4463, 10.1038/NMETH.4463]
[3]   An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics [J].
Angelidis, Ilias ;
Simon, Lukas M. ;
Fernandez, Isis E. ;
Strunz, Maximilian ;
Mayr, Christoph H. ;
Greiffo, Flavia R. ;
Tsitsiridis, George ;
Ansari, Meshal ;
Graf, Elisabeth ;
Strom, Tim-Matthias ;
Nagendran, Monica ;
Desai, Tushar ;
Eickelberg, Oliver ;
Mann, Matthias ;
Theis, Fabian J. ;
Schiller, Herbert B. .
NATURE COMMUNICATIONS, 2019, 10 (1)
[4]   Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage [J].
Aran, Dvir ;
Looney, Agnieszka P. ;
Liu, Leqian ;
Wu, Esther ;
Fong, Valerie ;
Hsu, Austin ;
Chak, Suzanna ;
Naikawadi, Ram P. ;
Wolters, Paul J. ;
Abate, Adam R. ;
Butte, Atul J. ;
Bhattacharya, Mallar .
NATURE IMMUNOLOGY, 2019, 20 (02) :163-+
[5]   Macrophages: Their role, activation and polarization in pulmonary diseases [J].
Arora, Shweta ;
Dev, Kapil ;
Agarwal, Beamon ;
Das, Pragnya ;
Syed, Mansoor Ali .
IMMUNOBIOLOGY, 2018, 223 (4-5) :383-396
[6]   Type 2 alveolar cells are stem cells in adult lung [J].
Barkauskas, Christina E. ;
Cronce, Michael J. ;
Rackley, Craig R. ;
Bowie, Emily J. ;
Keene, Douglas R. ;
Stripp, Barry R. ;
Randell, Scott H. ;
Noble, Paul W. ;
Hogan, Brigid L. M. .
JOURNAL OF CLINICAL INVESTIGATION, 2013, 123 (07) :3025-3036
[7]   Pathological effects of ionizing radiation: endothelial activation and dysfunction [J].
Baselet, Bjorn ;
Sonveaux, Pierre ;
Baatout, Sarah ;
Aerts, An .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2019, 76 (04) :699-728
[8]   The single-cell transcriptional landscape of mammalian organogenesis [J].
Cao, Junyue ;
Spielmann, Malte ;
Qiu, Xiaojie ;
Huang, Xingfan ;
Ibrahim, Daniel M. ;
Hill, Andrew J. ;
Zhang, Fan ;
Mundlos, Stefan ;
Christiansen, Lena ;
Steemers, Frank J. ;
Trapnell, Cole ;
Shendure, Jay .
NATURE, 2019, 566 (7745) :496-+
[9]   Heterogeneous groups of alveolar type II cells in lung homeostasis and repair [J].
Chen, Qian ;
Liu, Yuru .
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY, 2020, 319 (06) :C991-C996
[10]   Advances in Molecular Mechanisms and Treatment of Radiation-Induced Pulmonary Fibrosis [J].
Chen, Zhongjie ;
Wu, Zhiqiang ;
Ning, Wen .
TRANSLATIONAL ONCOLOGY, 2019, 12 (01) :162-169