Extending support for mouse data in the Molecular Signatures Database (MSigDB)

被引：132

作者：

Castanza, Anthony S. ^{[1
]}

Recla, Jill M. ^{[2
]}

Eby, David ^{[1
]}

Thorvaldsdottir, Helga ^{[3
]}

Bult, Carol J. ^{[2
]}

Mesirov, Jill P. ^{[1
,4
]}

机构：

[1] Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

[2] Jackson Lab Mammalian Genom, Bar Harbor, ME USA

[3] MIT & Harvard, Broad Inst, Cambridge, MA USA

[4] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA 92093 USA

来源：

NATURE METHODS | 2023年 / 20卷 / 11期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1038/s41592-023-02014-7

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：1619 / 1620

页数：2

共 6 条

[1] The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases [J].

Bult, Carol J. ;

Blake, Judith A. ;

Calvi, Brian R. ;

Cherry, J. Michael ;

DiFrancesco, Valentina ;

Fullem, Robert ;

Howe, Kevin L. ;

Kaufman, Thom ;

Mungall, Chris ;

Perrimon, Norbert ;

Shimoyama, Mary ;

Sternberg, Paul W. ;

Thomas, Paul ;

Westerfield, Monte .

GENETICS, 2019, 213 (04) :1189-1196

[2]

Herrero J, 2016, DATABASE-OXFORD, DOI [10.1093/database/baw053, 10.1093/database/bav096]

[3] An integrative approach to ortholog prediction for disease-focused and other functional studies [J].

Hu, Yanhui ;

Flockhart, Ian ;

Vinayagam, Arunachalam ;

Bergwitz, Clemens ;

Berger, Bonnie ;

Perrimon, Norbert ;

Mohr, Stephanie E. .

BMC BIOINFORMATICS, 2011, 12

[4] The Molecular Signatures Database Hallmark Gene Set Collection [J].

Liberzon, Arthur ;

Birger, Chet ;

Thorvaldsdottir, Helga ;

Ghandi, Mahmoud ;

Mesirov, Jill P. ;

Tamayo, Pablo .

CELL SYSTEMS, 2015, 1 (06) :417-425

[5] PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes [J].

Mootha, VK ;

Lindgren, CM ;

Eriksson, KF ;

Subramanian, A ;

Sihag, S ;

Lehar, J ;

Puigserver, P ;

Carlsson, E ;

Ridderstråle, M ;

Laurila, E ;

Houstis, N ;

Daly, MJ ;

Patterson, N ;

Mesirov, JP ;

Golub, TR ;

Tamayo, P ;

Spiegelman, B ;

Lander, ES ;

Hirschhorn, JN ;

Altshuler, D ;

Groop, LC .

NATURE GENETICS, 2003, 34 (03) :267-273

[6] Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [J].

Subramanian, A ;

Tamayo, P ;

Mootha, VK ;

Mukherjee, S ;

Ebert, BL ;

Gillette, MA ;

Paulovich, A ;

Pomeroy, SL ;

Golub, TR ;

Lander, ES ;

Mesirov, JP .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (43) :15545-15550

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