CCND1 Overexpression in Idiopathic Dilated Cardiomyopathy: A Promising Biomarker?

被引:3
作者
Dehghani, Khatereh [1 ]
Stanek, Agata [2 ]
Bagherabadi, Arash [3 ]
Atashi, Fatemeh [4 ]
Beygi, Mohammad [5 ]
Hooshmand, Amirreza [6 ]
Hamedi, Pezhman [7 ]
Farhang, Mohsen [8 ]
Bagheri, Soghra [9 ]
Zolghadri, Samaneh [10 ]
机构
[1] Jahrom Univ Med Sci, Dept Cardiol, Jahrom 7414846199, Iran
[2] Med Univ Silesia, Fac Med Sci Zabrze, Dept & Clin Internal Med, Batorego 15 St, PL-41902 Bytom, Poland
[3] Univ Mohaghegh Ardabili, Fac Sci, Dept Biol, Ardebil 5619911367, Iran
[4] Jahrom Univ Med Sci, Fac Med, Jahrom 7414846199, Iran
[5] Isfahan Univ Technol, Coll Agr, Dept Agr Biotechnol, Esfahan 8415683111, Iran
[6] Islamic Azad Univ, Fac Adv Sci & Technol, Dept Mol & Cellular Sci, Tehran Med Sci, Tehran 1916893813, Iran
[7] Jahrom Univ Med Sci, Fac Med, Res Ctr, Dept Med Lab Sci, Jahrom 7414846199, Iran
[8] Jahrom Univ Med Sci, Mol Study & Diagnost Ctr, Jahrom 7414846199, Iran
[9] Kermanshah Univ Med Sci, Hlth Technol Inst, Med Biol Res Ctr, Kermanshah 6714415185, Iran
[10] Islamic Azad Univ, Dept Biol, Jahrom Branch, Jahrom 7414785318, Iran
关键词
gene network analysis; microRNA; bioinformatics; diabetes; DisGeNET; BLOOD MONONUCLEAR-CELLS; GROWTH-FACTOR-I; GENE-EXPRESSION; HEART-FAILURE; CARDIOVASCULAR-DISEASE; MESSENGER-RNA; UP-REGULATION; RISK-FACTORS; VEGF-A; IDENTIFICATION;
D O I
10.3390/genes14061243
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Cardiomyopathy, a disorder of electrical or heart muscle function, represents a type of cardiac muscle failure and culminates in severe heart conditions. The prevalence of dilated cardiomyopathy (DCM) is higher than that of other types (hypertrophic cardiomyopathy and restrictive cardiomyopathy) and causes many deaths. Idiopathic dilated cardiomyopathy (IDCM) is a type of DCM with an unknown underlying cause. This study aims to analyze the gene network of IDCM patients to identify disease biomarkers. Data were first extracted from the Gene Expression Omnibus (GEO) dataset and normalized based on the RMA algorithm (Bioconductor package), and differentially expressed genes were identified. The gene network was mapped on the STRING website, and the data were transferred to Cytoscape software to determine the top 100 genes. In the following, several genes, including VEGFA, IGF1, APP, STAT1, CCND1, MYH10, and MYH11, were selected for clinical studies. Peripheral blood samples were taken from 14 identified IDCM patients and 14 controls. The RT-PCR results revealed no significant differences in the expression of the genes APP, MYH10, and MYH11 between the two groups. By contrast, the STAT1, IGF1, CCND1, and VEGFA genes were overexpressed in patients more than in controls. The highest expression was found for VEGFA, followed by CCND1 (p < 0.001). Overexpression of these genes may contribute to disease progression in patients with IDCM. However, more patients and genes need to be analyzed in order to achieve more robust results.
引用
收藏
页数:19
相关论文
共 96 条
[1]   Selective downregulation of VEGF-A165, VEGF-R1, and decreased capillary density in patients with dilative but not ischemic cardiomyopathy [J].
Abraham, D ;
Hofbauer, R ;
Schäfer, R ;
Blumer, R ;
Paulus, P ;
Miksovsky, A ;
Traxler, H ;
Kocher, A ;
Aharinejad, S .
CIRCULATION RESEARCH, 2000, 87 (08) :644-647
[2]  
Anand S S, 2000, Indian Heart J, V52, pS35
[3]   Free IGF-1, Intact IGFBP-4, and PicoPAPP-A are Altered in Acute Myocardial Infarction Compared to Stable Coronary Artery Disease and Healthy Controls [J].
Anastasilakis, Athanasios D. ;
Koulaxis, Dimitrios ;
Upadhyay, Jagriti ;
Pagkalidou, Eirini ;
Kefala, Nikoleta ;
Perakakis, Nikolaos ;
Polyzos, Stergios A. ;
Economou, Fotios ;
Mantzoros, Christos S. .
HORMONE AND METABOLIC RESEARCH, 2019, 51 (02) :112-119
[4]   Upregulated Angiogenesis Is Incompetent to Rescue Dilated Cardiomyopathy Phenotype in Mice [J].
Arif, Mohammed ;
Alam, Perwez ;
Ahmed, Rafeeq P. H. ;
Pandey, Raghav ;
Faridi, Hafeez M. ;
Sadayappan, Sakthivel .
CELLS, 2021, 10 (04)
[5]   Alterations in the expression of genes related to contractile function and hypertrophy of the left ventricle in chronically paced patients from the right ventricular apex [J].
Arkolaki, Eva G. ;
Simantirakis, Emmanuel N. ;
Kontaraki, Joanna E. ;
Chrysostomakis, Stavros I. ;
Patrianakos, Alexandros P. ;
Chlouverakis, Gregory I. ;
Nakou, Eleni S. ;
Vardas, Panos E. .
EUROPACE, 2015, 17 (10) :1563-1570
[6]  
Aziz Hamza, 2007, Genomic Med, V1, P105, DOI 10.1007/s11568-008-9017-x
[7]  
Bailly C, 2019, SAMJ S AFR MED J, V109, P673, DOI [10.7196/SAMJ.2019.v109i9.13936, 10.7196/samj.2019.v109i9.13936]
[8]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[9]   Predicting tissue-specific gene expression from whole blood transcriptome [J].
Basu, Mahashweta ;
Wang, Kun ;
Ruppin, Eytan ;
Hannenhalli, Sridhar .
SCIENCE ADVANCES, 2021, 7 (14)
[10]   Chagas' disease: an update on immune mechanisms and therapeutic strategies [J].
Boscardin, Silvia Beatriz ;
Troccoli Torrecilhas, Ana Claudia ;
Manarin, Romina ;
Revelli, Silvia ;
Gonzalez Rey, Elena ;
Tonelli, Renata Rosito ;
Silber, Ariel Mariano .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2010, 14 (6B) :1373-1384