Challenges and opportunities for circRNA identification and delivery

被引:44
作者
Dong, Jiani [1 ]
Zeng, Zhuoer [1 ,2 ]
Huang, Ying [1 ]
Chen, Chuanpin [1 ]
Cheng, Zeneng [1 ]
Zhu, Qubo [1 ]
机构
[1] Cent South Univ, Xiangya Sch Pharmaceut Sci, Changsha 410013, Hunan, Peoples R China
[2] Univ Glasgow, James Watt Sch Engn, Div Biomed Engn, Glasgow, Scotland
基金
中国国家自然科学基金;
关键词
Circular RNA; analysis; identification; detection; biosensors; DETECTING CIRCULAR RNAS; REVEALS; EXPRESSION; GENE; RECOGNITION; LANDSCAPE; APOPTOSIS; ABUNDANT; PCR;
D O I
10.1080/10409238.2023.2185764
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Circular RNAs (circRNAs) are evolutionarily conserved noncoding RNAs with tissue-specific expression patterns, and exert unique cellular functions that have the potential to become biomarkers in therapeutic applications. Therefore, accurate and sensitive detection of circRNA with facile platforms is essential for better understanding of circRNA biological processes and circRNA-related disease diagnosis and prognosis; and precise regulation of circRNA through efficient delivery of circRNA or siRNA is critical for therapeutic purposes. Here, we reviewed the current development of circRNA identification methodologies, including overviewing the purification steps, summarizing the sequencing methods of circRNA, as well as comparing the advantages and disadvantages of traditional and new detection methods. Then, we discussed the delivery and manipulation strategies for circRNAs in both research and clinic treatment. Finally, the challenges and opportunities of analyzing circRNAs were addressed.
引用
收藏
页码:19 / 35
页数:17
相关论文
共 105 条
[81]   Exosome-delivered circRNA promotes glycolysis to induce chemoresistance through the miR-122-PKM2 axis in colorectal cancer [J].
Wang, Xinyi ;
Zhang, Haiyang ;
Yang, Haiou ;
Bai, Ming ;
Ning, Tao ;
Deng, Ting ;
Liu, Rui ;
Fan, Qian ;
Zhu, Kegan ;
Li, Jialu ;
Zhan, Yang ;
Ying, Guoguang ;
Ba, Yi .
MOLECULAR ONCOLOGY, 2020, 14 (03) :539-555
[82]   CPSF4 regulates circRNA formation and microRNA mediated gene silencing in hepatocellular carcinoma [J].
Wang, Xueying ;
Dong, Jiani ;
Li, Xiaojing ;
Cheng, Zeneng ;
Zhu, Qubo .
ONCOGENE, 2021, 40 (25) :4338-4351
[83]   Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation [J].
Westholm, Jakub O. ;
Miura, Pedro ;
Olson, Sara ;
Shenker, Sol ;
Joseph, Brian ;
Sanfilippo, Piero ;
Celniker, Susan E. ;
Graveley, Brenton R. ;
Lai, Eric C. .
CELL REPORTS, 2014, 9 (05) :1966-1980
[84]   Amplified electrochemical detection of circular RNA in breast cancer patients using ferrocene-capped gold nanoparticle/streptavidin conjugates [J].
Wu, Daohong ;
Lu, Hanwen ;
Wang, Jingrui ;
Wu, Ling ;
Liu, Lin ;
Yi, Xinyao ;
Wang, Jianxiu ;
Tang, Hailin .
MICROCHEMICAL JOURNAL, 2021, 164
[85]   Emerging role of tumor-related functional peptides encoded by lncRNA and circRNA [J].
Wu, Pan ;
Mo, Yongzhen ;
Peng, Miao ;
Tang, Ting ;
Zhong, Yu ;
Deng, Xiangying ;
Xiong, Fang ;
Guo, Can ;
Wu, Xu ;
Li, Yong ;
Li, Xiaoling ;
Li, Guiyuan ;
Zeng, Zhaoyang ;
Xiong, Wei .
MOLECULAR CANCER, 2020, 19 (01)
[86]   An improved method for circular RNA purification using RNase R that efficiently removes linear RNAs containing G-quadruplexes or structured 3′ ends [J].
Xiao, Mei-Sheng ;
Wilusz, Jeremy E. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (16) :8755-8769
[87]   isoCirc catalogs full-length circular RNA isoforms in human transcriptomes [J].
Xin, Ruijiao ;
Gao, Yan ;
Gao, Yuan ;
Wang, Robert ;
Kadash-Edmondson, Kathryn E. ;
Liu, Bo ;
Wang, Yadong ;
Lin, Lan ;
Xing, Yi .
NATURE COMMUNICATIONS, 2021, 12 (01)
[88]   A comprehensive review of circRNA: from purification and identification to disease marker potential [J].
Xu, Sheng ;
Zhou, LuYu ;
Ponnusamy, Murugavel ;
Zhang, LiXia ;
Dong, YanHan ;
Zhang, YanHui ;
Wang, Qi ;
Liu, Jing ;
Wang, Kun .
PEERJ, 2018, 6
[89]   Extracellular Vesicle-Mediated Delivery of Circular RNA SCMH1 Promotes Functional Recovery in Rodent and Nonhuman Primate Ischemic Stroke Models [J].
Yang, Li ;
Han, Bing ;
Zhang, Zhiting ;
Wang, Shuguo ;
Bai, Ying ;
Zhang, Yuan ;
Tang, Ying ;
Du, Lingli ;
Xu, Ling ;
Wu, Fangfang ;
Zuo, Lei ;
Chen, Xufeng ;
Lin, Yu ;
Liu, Kezhong ;
Ye, Qingqing ;
Chen, Biling ;
Li, Bin ;
Tang, Tianci ;
Wang, Yu ;
Shen, Ling ;
Wang, Guangtian ;
Ju, Minzi ;
Yuan, Mengqin ;
Jiang, Wei ;
Zhang, John H. ;
Hu, Gang ;
Wang, Jianhong ;
Yao, Honghong .
CIRCULATION, 2020, 142 (06) :556-574
[90]  
Zelin Liu CT., 2021, ELIFE, V10