Genome-wide identification of nucleotide-binding domain leucine-rich repeat (NLR) genes and their association with green peach aphid (Myzus persicae) resistance in peach

被引：2
作者：
Yu, Haixiang [1 ]
Wu, Xuelian [1 ]
Liang, Jiahui [1 ]
Han, Ziying [1 ]
Xiao, Yuansong [1 ]
Du, Hao [1 ]
Liu, Yihua [2 ]
Guo, Jian [1 ]
Peng, Futian [1 ]
机构：
[1] Shandong Agr Univ, Coll Hort Sci & Engn, Tai An, Shandong, Peoples R China
[2] Linyi Univ, Coll Agr & Forestry Sci, Linyi 276000, Shandong, Peoples R China
来源：
BMC PLANT BIOLOGY | 2023年 / 23卷 / 01期
关键词：
Peach; Aphid; Nucleotide-binding domain leucine-rich repeat (NLR) genes; Genome-wide analysis; IMMUNE RECEPTORS; ARABIDOPSIS-THALIANA; ENCODING GENES; PROTEIN RX; PLANT; RECOGNITION; EVOLUTION; EXPRESSION; EFFECTORS; ELICITORS;
D O I：
10.1186/s12870-023-04474-7
中图分类号：
Q94 [植物学];
学科分类号：
071001 ;
摘要：
Resistance genes (R genes) are a class of genes that are immune to a wide range of diseases and pests. In planta, NLR genes are essential components of the innate immune system. Currently, genes belonging to NLR family have been found in a number of plant species, but little is known in peach. Here, 286 NLR genes were identified on peach genome by using their homologous genes in Arabidopsis thaliana as queries. These 286 NLR genes contained at least one NBS domain and LRR domain. Phylogenetic and N-terminal domain analysis showed that these NLRs could be separated into four subfamilies (I-IV) and their promoters contained many cis-elements in response to defense and phytohormones. In addition, transcriptome analysis showed that 22 NLR genes were up-regulated after infected by Green Peach Aphid (GPA), and showed different expression patterns. This study clarified the NLR gene family and their potential functions in aphid resistance process. The candidate NLR genes might be useful in illustrating the mechanism of aphid resistance in peach.
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页数：12
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共 63 条
  • [1] MEME SUITE: tools for motif discovery and searching
    Bailey, Timothy L.
    Boden, Mikael
    Buske, Fabian A.
    Frith, Martin
    Grant, Charles E.
    Clementi, Luca
    Ren, Jingyuan
    Li, Wilfred W.
    Noble, William S.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : W202 - W208
  • [2] Bateman A, 2002, NUCLEIC ACIDS RES, V30, P276, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
  • [3] Elicitors, effectors, and R genes:: The new paradigm and a lifetime supply of questions
    Bent, Andrew F.
    Mackey, David
    [J]. ANNUAL REVIEW OF PHYTOPATHOLOGY, 2007, 45 : 399 - 436
  • [4] The Membrane Bound LRR Lipoprotein Slr, and the Cell Wall-Anchored M1 Protein from Streptococcus pyogenes Both Interact with Type I Collagen
    Bober, Marta
    Morgelin, Matthias
    Olin, Anders I.
    von Pawel-Rammingen, Ulrich
    Collin, Mattias
    [J]. PLOS ONE, 2011, 6 (05):
  • [5] A Renaissance of Elicitors: Perception of Microbe-Associated Molecular Patterns and Danger Signals by Pattern-Recognition Receptors
    Boller, Thomas
    Felix, Georg
    [J]. ANNUAL REVIEW OF PLANT BIOLOGY, 2009, 60 : 379 - 406
  • [6] Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors
    Bonardi, Vera
    Tang, Saijun
    Stallmann, Anna
    Roberts, Melinda
    Cherkis, Karen
    Dangl, Jeffery L.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (39) : 16463 - 16468
  • [7] A Functional Genomics Approach Identifies Candidate Effectors from the Aphid Species Myzus persicae (Green Peach Aphid)
    Bos, Jorunn I. B.
    Prince, David
    Pitino, Marco
    Maffei, Massimo E.
    Win, Joe
    Hogenhout, Saskia A.
    [J]. PLOS GENETICS, 2010, 6 (11):
  • [8] Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector
    Caplan, Jeffrey L.
    Mamillapalli, Padmavathi
    Burch-Smith, Tessa M.
    Czymmek, Kirk
    Dinesh-Kumar, S. P.
    [J]. CELL, 2008, 132 (03) : 449 - 462
  • [9] Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1
    Castel, Baptiste
    Ngou, Pok-Man
    Cevik, Volkan
    Redkar, Amey
    Kim, Dae-Sung
    Yang, Ying
    Ding, Pingtao
    Jones, Jonathan D. G.
    [J]. NEW PHYTOLOGIST, 2019, 222 (02) : 966 - 980
  • [10] Cevik V, 2002, GENOME, V45, P939, DOI [10.1139/g02-067, 10.1139/G02-067]
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