Off-target effects in CRISPR/Cas9 gene editing

被引:147
|
作者
Guo, Congting [1 ,2 ]
Ma, Xiaoteng [3 ]
Gao, Fei [3 ]
Guo, Yuxuan [1 ,2 ,4 ,5 ]
机构
[1] Peking Univ, Sch Basic Med Sci, Hlth Sci Ctr, Beijing, Peoples R China
[2] Peking Univ, Inst Cardiovasc Sci, Beijing, Peoples R China
[3] Capital Med Univ, Beijing Anzhen Hosp, Dept Cardiol, Beijing, Peoples R China
[4] Minist Educ Key Lab Mol Cardiovasc Sci, Beijing, Peoples R China
[5] Beijing Key Lab Cardiovasc Receptors Res, Beijing, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
off-target effects; gene editing; CRISPR/Cas9; gene therapy; Cas9/sgRNA complex; GENOME-WIDE ANALYSIS; DOUBLE-STRANDED BREAKS; CRISPR-CAS9; NUCLEASES; UNBIASED DETECTION; HUMAN-CELLS; CAS9; DNA; SEQ; DELIVERY; BASE;
D O I
10.3389/fbioe.2023.1143157
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Gene editing stands for the methods to precisely make changes to a specific nucleic acid sequence. With the recent development of the clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system, gene editing has become efficient, convenient and programmable, leading to promising translational studies and clinical trials for both genetic and non-genetic diseases. A major concern in the applications of the CRISPR/Cas9 system is about its off-target effects, namely the deposition of unexpected, unwanted, or even adverse alterations to the genome. To date, many methods have been developed to nominate or detect the off-target sites of CRISPR/Cas9, which laid the basis for the successful upgrades of CRISPR/Cas9 derivatives with enhanced precision. In this review, we summarize these technological advancements and discuss about the current challenges in the management of off-target effects for future gene therapy.
引用
收藏
页数:11
相关论文
共 50 条
  • [41] Recent Advancements in Reducing the Off-Target Effect of CRISPR-Cas9 Genome Editing
    Mengstie, Misganaw Asmamaw
    Azezew, Muluken Teshome
    Dejenie, Tadesse Asmamaw
    Teshome, Assefa Agegnehu
    Admasu, Fitalew Tadele
    Teklemariam, Awgichew Behaile
    Mulu, Anemut Tilahun
    Agidew, Melaku Mekonnen
    Adugna, Dagnew Getnet
    Geremew, Habtamu
    Abebe, Endeshaw Chekol
    BIOLOGICS-TARGETS & THERAPY, 2024, 18 : 21 - 28
  • [42] CRISPR/CAS9, the King of Genome Editing Tools
    Bannikov, A. V.
    Lavrov, A. V.
    MOLECULAR BIOLOGY, 2017, 51 (04) : 514 - 525
  • [43] Mathematical and computational analysis of CRISPR Cas9 sgRNA off-target homologies
    Zhou, Michael
    Li, Daisy
    Manthey, Josehph
    Lioutikova, Ekaterina
    Zhou, Hong
    Huan, Xiaoli
    2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2016, : 449 - 454
  • [44] Development of a CRISPR/Cas9 System for Methylococcus capsulatus In Vivo Gene Editing
    Tapscott, Timothy
    Guarnieri, Michael T.
    Henard, Calvin A.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2019, 85 (11)
  • [45] Advances in detecting and reducing off-target effects generated by CRISPR-mediated genome editing
    Li, Jinjing
    Hong, Shunyan
    Chen, Wanjin
    Zuo, Erwei
    Yang, Hui
    JOURNAL OF GENETICS AND GENOMICS, 2019, 46 (11) : 513 - 521
  • [46] Off-target Effects in CRISPR/Cas9-mediated Genome Engineering
    Zhang, Xiao-Hui
    Tee, Louis Y.
    Wang, Xiao-Gang
    Huang, Qun-Shan
    Yang, Shi-Hua
    MOLECULAR THERAPY-NUCLEIC ACIDS, 2015, 4 : e264
  • [47] Interpretable CRISPR/Cas9 off-target activities with mismatches and indels prediction using BERT
    Luo, Ye
    Chen, Yaowen
    Xie, HuanZeng
    Zhu, Wentao
    Zhang, Guishan
    COMPUTERS IN BIOLOGY AND MEDICINE, 2024, 169
  • [48] Potential high-frequency off-target mutagenesis induced by CRISPR/Cas9 in Arabidopsis and its prevention
    Zhang, Qiang
    Xing, Hui-Li
    Wang, Zhi-Ping
    Zhang, Hai-Yan
    Yang, Fang
    Wang, Xue-Chen
    Chen, Qi-Jun
    PLANT MOLECULAR BIOLOGY, 2018, 96 (4-5) : 445 - 456
  • [49] Application of CRISPR/Cas9 System for Efficient Gene Editing in Peanut
    Neelakandan, Anjanasree K.
    Wright, David A.
    Traore, Sy M.
    Ma, Xingli
    Subedi, Binita
    Veeramasu, Suman
    Spalding, Martin H.
    He, Guohao
    PLANTS-BASEL, 2022, 11 (10):
  • [50] Applications of CRISPR/Cas9 for Gene Editing in Hereditary Movement Disorders
    Im, Wooseok
    Moon, Jangsup
    Kim, Manho
    JOURNAL OF MOVEMENT DISORDERS, 2016, 9 (03) : 136 - 143