Bezier interpolation improves the inference of dynamical models from data

被引:2
作者
Shimagaki, Kai [1 ]
Barton, John P. [1 ,2 ]
机构
[1] Univ Calif Riverside, Dept Phys & Astron, Riverside, CA 92521 USA
[2] Univ Pittsburgh, Sch Med, Dept Computat & Syst Biol, Pittsburgh, PA 15213 USA
基金
美国国家卫生研究院;
关键词
SELECTION COEFFICIENTS; BAYESIAN-INFERENCE;
D O I
10.1103/PhysRevE.107.024116
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Many dynamical systems, from quantum many-body systems to evolving populations to financial markets, are described by stochastic processes. Parameters characterizing such processes can often be inferred using informa-tion integrated over stochastic paths. However, estimating time-integrated quantities from real data with limited time resolution is challenging. Here, we propose a framework for accurately estimating time-integrated quantities using Bezier interpolation. We applied our approach to two dynamical inference problems: Determining fitness parameters for evolving populations and inferring forces driving Ornstein-Uhlenbeck processes. We found that Bezier interpolation reduces the estimation bias for both dynamical inference problems. This improvement was especially noticeable for data sets with limited time resolution. Our method could be broadly applied to improve accuracy for other dynamical inference problems using finitely sampled data.
引用
收藏
页数:6
相关论文
共 50 条
  • [1] Application of the Bernstein Polynomials for Solving Volterra Integral Equations with Convolution Kernels
    Alturk, Ahmet
    [J]. FILOMAT, 2016, 30 (04) : 1045 - 1052
  • [2] Bishop C. M., 2007, Pattern Recognition and Machine Learning Information Science and Statistics, V1st
  • [3] A Langevin approach to stock market fluctuations and crashes
    Bouchaud, JP
    Cont, R
    [J]. EUROPEAN PHYSICAL JOURNAL B, 1998, 6 (04) : 543 - 550
  • [4] Inferring the Dynamics of Underdamped Stochastic Systems
    Brueckner, David B.
    Ronceray, Pierre
    Broedersz, Chase P.
    [J]. PHYSICAL REVIEW LETTERS, 2020, 125 (05)
  • [5] Brückner DB, 2019, NAT PHYS, V15, P595, DOI 10.1038/s41567-019-0445-4
  • [6] Transformations of Wiener integrals under translations
    Cameron, RH
    Martin, WT
    [J]. ANNALS OF MATHEMATICS, 1944, 45 : 386 - 396
  • [7] Path Planning Based on Bezier Curve for Autonomous Ground Vehicles
    Choi, Ji-wung
    Curry, Renwick
    Elkaim, Gabriel
    [J]. WCECS 2008: ADVANCES IN ELECTRICAL AND ELECTRONICS ENGINEERING - IAENG SPECIAL EDITION OF THE WORLD CONGRESS ON ENGINEERING AND COMPUTER SCIENCE, PROCEEDINGS, 2009, : 158 - 166
  • [8] Christensen R., 2019, Advanced Linear Modeling, DOI 10.1007/978-3-030-29164-8
  • [9] From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction
    Cocco, Simona
    Monasson, Remi
    Weigt, Martin
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2013, 9 (08)
  • [10] Anomalous dynamics of cell migration
    Dieterich, Peter
    Klages, Rainer
    Preuss, Roland
    Schwab, Albrecht
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (02) : 459 - 463