Network pharmacology and bioinformatics approach reveals the therapeutic mechanism of action of curcumin in Alzheimer disease

被引:16
作者
Vijh, Deepanshi [1 ]
Imam, Md. Ali [2 ]
Ul Haque, Mohd Maksuf [3 ]
Das, Subhajit [4 ]
Islam, Asimul [2 ]
Malik, Md. Zubbair [5 ,6 ]
机构
[1] Guru Gobind Singh Indraprastha Univ, Univ Sch Biotechnol, Agr Plant Biotechnol Lab ARL 316, Sect 16-C, New Delhi 110078, India
[2] Jamia Millia Islamia, Ctr Interdisciplinary Res Basic Sci, New Delhi 110025, India
[3] Jamia Millia Islamia, Dept Comp Sci, New Delhi 110025, India
[4] Natl Ctr Cell Sci, Pune 411007, Maharashtra, India
[5] Jawaharlal Nehru Univ, Dept Biotechnol, New Delhi 110067, India
[6] Dasman Diabet Inst, Dept Genet & Bioinformat, POB 1180, Dasman 15462, Kuwait
关键词
Curcumin; Alzheimer's disease; Network pharmacology; Key genes; Temporospatial expression; SET ENRICHMENT ANALYSIS; AMYLOID-BETA; CATHEPSIN-D; WEB SERVER; PROTEIN; GENE; KNOWLEDGE; RECEPTOR; TARGET;
D O I
10.1007/s11011-023-01160-3
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Curcumin is a natural anti-inflammatory and antioxidant substance which plays a major role in reducing the amyloid plaques formation, which is the major cause of Alzheimer's disease (AD). Consequently, a methodical approach was used to select the potential protein targets of curcumin in AD through network pharmacology. In this study, through integrative methods, AD targets of curcumin through SwissTargetPrediction database, STITCH database, BindingDB, PharmMapper, Therapeutic Target Database (TTD), Online Mendelian Inheritance in Man (OMIM) database were predicted followed by gene enrichment analysis, network construction, network topology, and docking studies. Gene ontology analysis facilitated identification of a list of possible AD targets of curcumin (74 targets genes). The correlation of the obtained targets with AD was analysed by using gene ontology (GO) pathway enrichment analyses and Kyoto Encyclopaedia of Genes and Genomes (KEGG). We have incorporated the applied network pharmacological approach to identify key genes. Furthermore, we have performed molecular docking for analysing the mechanism of curcumin. In order to validate the temporospatial expression of key genes in human central nervous system (CNS), we searched the Human Brain Transcriptome (HBT) dataset. We identified top five key genes namely, PPAR gamma, MAPK1, STAT3, KDR and APP. Further validated the expression profiling of these key genes in publicly available brain data expression profile databases. In context to a valuable addition in the treatment of AD, this study is concluded with novel insights into the therapeutic mechanisms of curcumin, will ease the treatment of AD with the clinical application of curcumin.
引用
收藏
页码:1205 / 1220
页数:16
相关论文
共 61 条
[1]   Virtual screening, ADMET profiling, PASS prediction, and bioactivity studies of potential inhibitory roles of alkaloids, phytosterols, and flavonoids against COVID-19 main protease (Mpro) [J].
Abdul-Hammed, Misbaudeen ;
Adedotun, Ibrahim Olaide ;
Olajide, Monsurat ;
Irabor, Christianah Otoame ;
Afolabi, Tolulope Irapada ;
Gbadebo, Ibrahim Olajide ;
Rhyman, Lydia ;
Ramasami, Ponnadurai .
NATURAL PRODUCT RESEARCH, 2022, 36 (12) :3110-3116
[2]   Exploring novel key regulators in breast cancer network [J].
Ali, Shahnawaz ;
Malik, Md Zubbair ;
Singh, Soibam Shyamchand ;
Chirom, Keilash ;
Ishrat, Romana ;
Singh, R. K. Brojen .
PLOS ONE, 2018, 13 (06)
[3]   2018 Alzheimer's disease facts and figures [J].
不详 .
ALZHEIMERS & DEMENTIA, 2018, 14 (03) :367-425
[4]   Computing topological parameters of biological networks [J].
Assenov, Yassen ;
Ramirez, Fidel ;
Schelhorn, Sven-Eric ;
Lengauer, Thomas ;
Albrecht, Mario .
BIOINFORMATICS, 2008, 24 (02) :282-284
[5]   GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite [J].
Barshir, Ruth ;
Fishilevich, Simon ;
Iny-Stein, Tsippi ;
Zelig, Ofer ;
Mazor, Yaron ;
Guan-Golan, Yaron ;
Safran, Marilyn ;
Lancet, Doron .
JOURNAL OF MOLECULAR BIOLOGY, 2021, 433 (11)
[6]   Network analyses in systems pharmacology [J].
Berger, Seth I. ;
Iyengar, Ravi .
BIOINFORMATICS, 2009, 25 (19) :2466-2472
[7]   A Supramolecular Approach to Structure-Based Design with A Focus on Synthons Hierarchy in Ornithine-Derived Ligands: Review, Synthesis, Experimental and in Silico Studies [J].
Bojarska, Joanna ;
Remko, Milan ;
Breza, Martin ;
Madura, Izabela D. ;
Kaczmarek, Krzysztof ;
Zabrocki, Janusz ;
Wolf, Wojciech M. .
MOLECULES, 2020, 25 (05)
[8]   Activation of Extrasynaptic, But Not Synaptic, NMDA Receptors Modifies Amyloid Precursor Protein Expression Pattern and Increases Amyloid-β Production [J].
Bordji, Karim ;
Becerril-Ortega, Javier ;
Nicole, Olivier ;
Buisson, Alain .
JOURNAL OF NEUROSCIENCE, 2010, 30 (47) :15927-15942
[9]   A faster algorithm for betweenness centrality [J].
Brandes, U .
JOURNAL OF MATHEMATICAL SOCIOLOGY, 2001, 25 (02) :163-177
[10]   Effects of a standardized Bacopa monnieri extract on cognitive performance, anxiety, and depression in the elderly:: A randomized, double-blind, placebo-controlled trial [J].
Calabrese, Carlo ;
Gregory, William L. ;
Leo, Michael ;
Kraemer, Dale ;
Bone, Kerry ;
Oken, Barry .
JOURNAL OF ALTERNATIVE AND COMPLEMENTARY MEDICINE, 2008, 14 (06) :707-713