A Deep Reinforcement Learning Approach to Droplet Routing for Erroneous Digital Microfluidic Biochips

被引:4
|
作者
Kawakami, Tomohisa [1 ]
Shiro, Chiharu [1 ]
Nishikawa, Hiroki [2 ]
Kong, Xiangbo [3 ]
Tomiyama, Hiroyuki [1 ]
Yamashita, Shigeru [4 ]
机构
[1] Ritsumeikan Univ, Grad Sch Sci & Engn, Kusatsu 5258577, Japan
[2] Osaka Univ, Grad Sch Informat Sci & Technol, Osaka 5650871, Japan
[3] Toyama Prefectural Univ, Fac Engn, Dept Intelligent Robot, Imizu 9390398, Japan
[4] Ritsumeikan Univ, Coll Informat Sci & Engn, Kusatsu 5258577, Japan
关键词
biochips; digital microfluidic biochips; deep reinforcement learning; optimization; ELECTROWETTING-BASED ACTUATION; LIQUID DROPLETS; DESIGN; LEVEL;
D O I
10.3390/s23218924
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Digital microfluidic biochips (DMFBs), which are used in various fields like DNA analysis, clinical diagnosis, and PCR testing, have made biochemical experiments more compact, efficient, and user-friendly than the previous methods. However, their reliability is often compromised by their inability to adapt to all kinds of errors. Errors in biochips can be categorized into two types: known errors, and unknown errors. Known errors are detectable before the start of the routing process using sensors or cameras. Unknown errors, in contrast, only become apparent during the routing process and remain undetected by sensors or cameras, which can unexpectedly stop the routing process and diminish the reliability of biochips. This paper introduces a deep reinforcement learning-based routing algorithm, designed to manage not only known errors but also unknown errors. Our experiments demonstrated that our algorithm outperformed the previous ones in terms of the success rate of the routing, in the scenarios including both known errors and unknown errors. Additionally, our algorithm contributed to detecting unknown errors during the routing process, identifying the most efficient routing path with a high probability.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] A deep-reinforcement learning approach for optimizing homogeneous droplet routing in digital microfluidic biochips
    Saha, Basudev
    Das, Bidyut
    Majumder, Mukta
    NANOTECHNOLOGY AND PRECISION ENGINEERING, 2023, 6 (02)
  • [2] A Cooperative Multiagent Reinforcement Learning Framework for Droplet Routing in Digital Microfluidic Biochips
    Jiang, Chen
    Yang, Rongquan
    Xu, Qi
    Yao, Hailong
    Ho, Tsung-Yi
    Yuan, Bo
    IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS, 2023, 42 (09) : 3007 - 3020
  • [3] Virtual Droplet Routing Algorithm for Digital Microfluidic Biochips
    Jaluka, Vivek
    Rajesh, Kolluri
    Pyne, Sumanta
    2020 24TH INTERNATIONAL SYMPOSIUM ON VLSI DESIGN AND TEST (VDAT), 2020,
  • [4] Droplet Routing Based on Double Deep Q-Network Algorithm for Digital Microfluidic Biochips
    Rajesh, Kolluri
    Pyne, Sumanta
    JOURNAL OF CIRCUITS SYSTEMS AND COMPUTERS, 2022, 31 (17)
  • [5] Dynamic Adaptation Using Deep Reinforcement Learning for Digital Microfluidic Biochips
    Liang, Tung-Che
    Chang, Yi-Chen
    Zhong, Zhanwei
    Bigdeli, Yaas
    Ho, Tsung-Yi
    Chakrabarty, Krishnendu
    Fair, Richard
    ACM TRANSACTIONS ON DESIGN AUTOMATION OF ELECTRONIC SYSTEMS, 2024, 29 (02)
  • [6] A Deep Reinforcement Learning-based Routing Algorithm for Unknown Erroneous Cells in DMFBs
    Kawakami, Tomohisa
    Shiro, Chiharu
    Nishikawa, Hiroki
    Kong, Xiangbo
    Tomiyama, Hiroyuki
    Yamashita, Shigeru
    2023 21ST IEEE INTERREGIONAL NEWCAS CONFERENCE, NEWCAS, 2023,
  • [7] Integrated Droplet Routing and Defect Tolerance in the Synthesis of Digital Microfluidic Biochips
    Xu, Tao
    Chakrabarty, Krishnendu
    ACM JOURNAL ON EMERGING TECHNOLOGIES IN COMPUTING SYSTEMS, 2008, 4 (03)
  • [8] A Contamination Aware Droplet Routing Algorithm for the Synthesis of Digital Microfluidic Biochips
    Huang, Tsung-Wei
    Lin, Chun-Hsien
    Ho, Tsung-Yi
    IEEE TRANSACTIONS ON COMPUTER-AIDED DESIGN OF INTEGRATED CIRCUITS AND SYSTEMS, 2010, 29 (11) : 1682 - 1695
  • [9] A MULTI-PIN DROPLET ROUTING ALGORITHM FOR DIGITAL MICROFLUIDIC BIOCHIPS
    Roy, Pranab
    Rahaman, Hafizur
    Dasgupta, Parthasarathi
    BIODEVICES 2011, 2011, : 216 - +
  • [10] An evolutionary algorithm with indirect representation for droplet routing in digital microfluidic biochips
    Jiang, Chen
    Yang, Rong-Quan
    Yuan, Bo
    ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, 2022, 115