Comprehensive Genome-Wide Identification of the RNA-Binding Glycine-Rich Gene Family and Expression Profiling under Abiotic Stress in Brassica oleracea

被引:3
作者
Duan, Mengmeng [1 ]
Zong, Mei [1 ]
Guo, Ning [1 ]
Han, Shuo [1 ]
Wang, Guixiang [1 ]
Miao, Liming [2 ]
Liu, Fan [1 ]
机构
[1] Beijing Acad Agr & Forestry Sci, Beijing Vegetable Res Ctr, Natl Engn Res Ctr Vegetables, State Key Lab Vegetable Biobreeding,Minist Agr,Key, Beijing 100097, Peoples R China
[2] Shanghai Acad Agr Sci, Hort Res Inst, Shanghai 201403, Peoples R China
来源
PLANTS-BASEL | 2023年 / 12卷 / 21期
基金
中国国家自然科学基金;
关键词
Brassica oleracea; RNA-binding glycine-rich (RBG) genes; abiotic stress; expression profiling; BoiRBGA13; MULTIPLE SEQUENCE ALIGNMENT; APICAL HOOK DEVELOPMENT; SHOCK DOMAIN PROTEINS; ARABIDOPSIS-THALIANA; ORYZA-SATIVA; FUNCTIONAL-CHARACTERIZATION; EVOLUTION; CLASSIFICATION; VISUALIZATION; SUPERFAMILY;
D O I
10.3390/plants12213706
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The RNA-binding glycine-rich proteins (RBGs) of the glycine-rich protein family play vital roles in regulating gene expression both at the transcriptional and post-transcriptional levels. However, the members and functions in response to abiotic stresses of the RBG gene family remain unclear in Brassica oleracea. In this study, a total of 19 BoiRBG genes were identified through genome-wide analysis in broccoli. The characteristics of BoiRBG sequences and their evolution were examined. An analysis of synteny indicated that the expansion of the BoiRBG gene family was primarily driven by whole-genome duplication and tandem duplication events. The BoiRBG expression patterns revealed that these genes are involved in reaction to diverse abiotic stress conditions (i.e., simulated drought, salinity, heat, cold, and abscisic acid) and different organs. In the present research, the up-regulation of BoiRBGA13 expression was observed when subjected to both NaCl-induced and cold stress conditions in broccoli. Moreover, the overexpression of BoiRBGA13 resulted in a noteworthy reduction in taproot lengths under NaCl stress, as well as the inhibition of seed germination under cold stress in broccoli, indicating that RBGs play different roles under various stresses. This study provides insights into the evolution and functions of BoiRBG genes in Brassica oleracea and other Brassicaceae family plants.
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页数:17
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共 66 条
  • [1] Beyond transcription: RNA-binding proteins as emerging regulators of plant response to environmental constraints
    Ambrosone, Alfredo
    Costa, Antonello
    Leone, Antonella
    Grillo, Stefania
    [J]. PLANT SCIENCE, 2012, 182 : 12 - 18
  • [2] Coordinated regulation of apical hook development by gibberellins and ethylene in etiolated Arabidopsis seedlings
    An, Fengying
    Zhang, Xing
    Zhu, Ziqiang
    Ji, Yusi
    He, Wenrong
    Jiang, Zhiqiang
    Li, Mingzhe
    Guo, Hongwei
    [J]. CELL RESEARCH, 2012, 22 (05) : 915 - 927
  • [3] Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps
    Belser, Caroline
    Istace, Benjamin
    Denis, Erwan
    Dubarry, Marion
    Baurens, Franc-Christophe
    Falentin, Cyril
    Genete, Mathieu
    Berrabah, Wahiba
    Chevre, Anne-Marie
    Delourme, Regine
    Deniot, Gwenaelle
    Denoeud, France
    Duffe, Philippe
    Engelen, Stefan
    Lemainque, Arnaud
    Manzanares-Dauleux, Maria
    Martin, Guillaume
    Morice, Jerome
    Noel, Benjamin
    Vekemans, Xavier
    D'Hont, Angelique
    Rousseau-Gueutin, Mathieu
    Barbe, Valerie
    Cruaud, Corinne
    Wincker, Patrick
    Aury, Jean-Marc
    [J]. NATURE PLANTS, 2018, 4 (11) : 879 - +
  • [4] Functional characterization of two cold shock domain proteins from Oryza sativa
    Chaikam, Vijay
    Karlson, Dale
    [J]. PLANT CELL AND ENVIRONMENT, 2008, 31 (07) : 995 - 1006
  • [5] Gene Family Evolution by Duplication, Speciation, and Loss
    Chauve, Cedric
    Doyon, Jean-Philippe
    El-Mabrouk, Nadia
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2008, 15 (08) : 1043 - 1062
  • [6] Ultrasensitive fluorescent proteins for imaging neuronal activity
    Chen, Tsai-Wen
    Wardill, Trevor J.
    Sun, Yi
    Pulver, Stefan R.
    Renninger, Sabine L.
    Baohan, Amy
    Schreiter, Eric R.
    Kerr, Rex A.
    Orger, Michael B.
    Jayaraman, Vivek
    Looger, Loren L.
    Svoboda, Karel
    Kim, Douglas S.
    [J]. NATURE, 2013, 499 (7458) : 295 - +
  • [7] Characterization and Expression Analysis of Four Glycine-Rich RNA-Binding Proteins Involved in Osmotic Response in Tobacco (Nicotiana tabacum cv. Xanthi)
    Chen Xuan
    Zeng Qian-chun
    Lu Xiu-ping
    Yu Di-qiu
    Li Wen-zheng
    [J]. AGRICULTURAL SCIENCES IN CHINA, 2010, 9 (11): : 1577 - 1587
  • [8] Syntenic gene analysis between Brassica rapa and other Brassicaceae species
    Cheng, Feng
    Wu, Jian
    Fang, Lu
    Wang, Xiaowu
    [J]. FRONTIERS IN PLANT SCIENCE, 2012, 3
  • [9] CHORY J, 1991, PLANT CELL, V3, P445, DOI 10.1105/tpc.3.5.445
  • [10] The evolutionarily conserved multifunctional glycine-rich RNA-binding proteins play key roles in development and stress adaptation
    Ciuzan, Oana
    Hancock, John
    Pamfil, Doru
    Wilson, Ian
    Ladomery, Michael
    [J]. PHYSIOLOGIA PLANTARUM, 2015, 153 (01) : 1 - 11