Helicobacter zhangjianzhongii sp. nov., isolated from dog feces

被引:1
作者
Wang, Hairui [1 ]
Gu, Yixin [1 ]
Zhou, Guilan [1 ]
Chen, Xiaoli [1 ]
Zhang, Xin [1 ]
Shao, Zhujun [1 ]
Zhang, Maojun [1 ]
机构
[1] Chinese Ctr Dis Control & Prevent, Natl Inst Communicable Dis Control & Prevent, State Key Lab Infect Dis Prevent & Control, Beijing, Peoples R China
关键词
Helicobacter zhangjianzhongii; novel species; genomic characteristics; phylogenetic analyses; antimicrobial susceptibility; ANTIBIOTIC-RESISTANCE; PULLORUM; TREES; CAMPYLOBACTER; EVOLUTION; SEQUENCES; DATABASE; VERSION;
D O I
10.3389/fgene.2023.1240581
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In 2019, two distinct bacterial isolates were independently isolated from the fecal samples of separate dogs in Beijing, China. These cells exhibit microaerobic, are Gram-negative, motile, and possess a characteristic spiral shape with bipolar single flagellum. They display positive results for the oxidase test while being negative for both catalase and urease. These organisms measure approximately 0.2-0.3 mu m in width and 4.5-6 mu m in length. The colonies are wet, flat, grey, circular, and smooth with sizes ranging from 1 to 2 mm in diameter after 2 days of growth. However, strains may exhibit variations in size and morphology following extended incubation. Phylogenetic analyses based on the 16S rRNA gene and core genome indicated that these two isolates belong to the genus Helicobacter and formed a robust clade that was remains distinctly separate from currently recognized species. These two isolates shared low dDDH relatedness and ANI values with their closest species Helicobacter canis CCUG 32756(T), with these values falling below the commonly cutoff values for strains of the same species. The genomic DNA G + C contents of strain XJK30-2 were 44.93 mol%. Comparing the phenotypic and phylogenetic features between these two isolates and their closely related species, XJK30-2 represents a novel species within the genus Helicobacter, for which the name Helicobacter zhangjianzhongii sp. nov. (Type strain XJK30-2(T) = GDMCC 1.3695(T)) is proposed.
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页数:11
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共 48 条
  • [1] PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
    Akhter, Sajia
    Aziz, Ramy K.
    Edwards, Robert A.
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (16) : e126
  • [2] CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
    Alcock, Brian P.
    Raphenya, Amogelang R.
    Lau, Tammy T. Y.
    Tsang, Kara K.
    Bouchard, Megane
    Edalatmand, Arman
    Huynh, William
    Nguyen, Anna-Lisa, V
    Cheng, Annie A.
    Liu, Sihan
    Min, Sally Y.
    Miroshnichenko, Anatoly
    Tran, Hiu-Ki
    Werfalli, Rafik E.
    Nasir, Jalees A.
    Oloni, Martins
    Speicher, David J.
    Florescu, Alexandra
    Singh, Bhavya
    Faltyn, Mateusz
    Hernandez-Koutoucheva, Anastasia
    Sharma, Arjun N.
    Bordeleau, Emily
    Pawlowski, Andrew C.
    Zubyk, Haley L.
    Dooley, Damion
    Griffiths, Emma
    Maguire, Finlay
    Winsor, Geoff L.
    Beiko, Robert G.
    Brinkman, Fiona S. L.
    Hsiao, William W. L.
    Domselaar, Gary, V
    McArthur, Andrew G.
    [J]. NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) : D517 - D525
  • [3] PHASTER: a better, faster version of the PHAST phage search tool
    Arndt, David
    Grant, Jason R.
    Marcu, Ana
    Sajed, Tanvir
    Pon, Allison
    Liang, Yongjie
    Wishart, David S.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) : W16 - W21
  • [4] GRAM STAIN AND THE ETIOLOGY OF LOBAR PNEUMONIA, AN HISTORICAL NOTE
    AUSTRIAN, R
    [J]. BACTERIOLOGICAL REVIEWS, 1960, 24 (03) : 261 - 265
  • [5] Description of the two novel species of the genus Helicobacter: Helicobacter anatolicus sp. nov., and Helicobacter kayseriensis sp. nov., isolated from feces of urban wild birds
    Aydin, Fuat
    Saticioglu, Izzet Burcin
    Ay, Hilal
    Kayman, Tuba
    Karakaya, Emre
    Abay, Secil
    [J]. SYSTEMATIC AND APPLIED MICROBIOLOGY, 2022, 45 (04)
  • [6] Helicobacter pullorum Isolated from Fresh Chicken Meat: Antibiotic Resistance and Genomic Traits of an Emerging Foodborne Pathogen
    Borges, Vitor
    Santos, Andrea
    Correia, Cristina Belo
    Saraiva, Margarida
    Menard, Armelle
    Vieira, Luis
    Sampaio, Daniel A.
    Pinheiro, Miguel
    Gomes, Joao Paulo
    Oleastro, Monica
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2015, 81 (23) : 8155 - 8163
  • [7] Prevalence of Helicobacter pullorum among patients with gastrointestinal disease and clinically healthy persons
    Ceelen, L
    Decostere, A
    Verschraegen, G
    Ducatelle, R
    Haesebrouck, F
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (06) : 2984 - 2986
  • [8] fastp: an ultra-fast all-in-one FASTQ preprocessor
    Chen, Shifu
    Zhou, Yanqing
    Chen, Yaru
    Gu, Jia
    [J]. BIOINFORMATICS, 2018, 34 (17) : 884 - 890
  • [9] Contreras-Omaña R, 2021, REV GASTROENTEROL ME, V86, P265, DOI [10.1016/j.rgmx.2021.02.003, 10.1016/j.rgmxen.2021.06.004]
  • [10] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376