Accelerating advances in landscape connectivity modelling with the ConScape library

被引:6
作者
Van Moorter, Bram [1 ]
Kivimaki, Ilkka [2 ]
Noack, Andreas [3 ]
Devooght, Robin [4 ]
Panzacchi, Manuela [1 ]
Hall, Kimberly R. [5 ]
Leleux, Pierre [6 ]
Saerens, Marco [6 ]
机构
[1] Norwegian Inst Nat Res, NINA, Trondheim, Norway
[2] Finnish Inst Occupat Hlth, Helsinki, Finland
[3] Julia Comp, Copenhagen, Denmark
[4] Univ Libre Bruxelles, Brussels, Belgium
[5] Nature Conservancy, Arlington Cty, VA USA
[6] Catholic Univ Louvain, Ottignies, Belgium
来源
METHODS IN ECOLOGY AND EVOLUTION | 2023年 / 14卷 / 01期
关键词
circuitscape; conefor; ecological networks; least-cost path; metapopulation; random walk; randomized shortest paths; HABITAT AVAILABILITY; NETWORK ANALYSIS; CIRCUIT-THEORY; PATCHES; CONTRIBUTE; CORRIDORS; SELECTION; ECOLOGY; PACKAGE; JULIA;
D O I
10.1111/2041-210X.13850
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Increasingly precise spatial data (e.g. high-resolution imagery from remote sensing) allow for improved representations of the landscape network for assessing the combined effects of habitat loss and connectivity declines on biodiversity. However, evaluating large landscape networks presents a major computational challenge both in terms of working memory and computation time. We present the ConScape (i.e. "connected landscapes") software library implemented in the high-performance open-source Julia language to compute metrics for connected habitat and movement flow on high-resolution landscapes. The combination of Julia's 'just-in-time' compiler, efficient algorithms and 'landmarks' to reduce the computational load allows ConScape to compute landscape ecological metrics-originally developed in metapopulation ecology (such as 'metapopulation capacity' and 'probability of connectivity')-for large landscapes. An additional major innovation in ConScape is the adoption of the randomized shortest paths framework to represent connectivity along the continuum from optimal to random movements, instead of only those extremes. We demonstrate ConScape's potential for using large datasets in sustainable land planning by modelling landscape connectivity based on remote-sensing data paired with GPS tracking of wild reindeer in Norway. To guide users, we discuss other applications, and provide a series of worked examples to showcase all ConScape's functionalities in Supplementary Material. Built by a team of ecologists, network scientists and software developers, ConScape is able to efficiently compute landscape metrics for high-resolution landscape representations to leverage the availability of large data for sustainable land use and biodiversity conservation. As a Julia implementation, ConScape combines computational efficiency with a transparent code base, which facilitates continued innovation through contributions from the rapidly growing community of landscape and connectivity modellers using Julia.
引用
收藏
页码:133 / 145
页数:13
相关论文
共 62 条
  • [1] The application of 'least-cost' modelling as a functional landscape model
    Adriaensen, F
    Chardon, JP
    De Blust, G
    Swinnen, E
    Villalba, S
    Gulinck, H
    Matthysen, E
    [J]. LANDSCAPE AND URBAN PLANNING, 2003, 64 (04) : 233 - 247
  • [2] Anantharaman R., 2019, CIRCUITSCAPE JULIA H, DOI DOI 10.21105/JCON.00058
  • [3] A Global Mitigation Hierarchy for Nature Conservation
    Arlidge, William N. S.
    Bull, Joseph W.
    Addison, Prue F. E.
    Burgass, Michael J.
    Gianuca, Dimas
    Gorham, Taylor M.
    Jacob, Celine
    Shumway, Nicole
    Sinclair, Samuel P.
    Watson, James E. M.
    Wilcox, Chris
    Milner-Gulland, E. J.
    [J]. BIOSCIENCE, 2018, 68 (05) : 336 - 347
  • [4] Do habitat corridors provide connectivity?
    Beier, P
    Noss, RF
    [J]. CONSERVATION BIOLOGY, 1998, 12 (06) : 1241 - 1252
  • [5] Forks in the road: Choices in procedures for designing wildland linkages
    Beier, Paul
    Majka, Daniel R.
    Spencer, Wayne D.
    [J]. CONSERVATION BIOLOGY, 2008, 22 (04) : 836 - 851
  • [6] Julia: A Fresh Approach to Numerical Computing
    Bezanson, Jeff
    Edelman, Alan
    Karpinski, Stefan
    Shah, Viral B.
    [J]. SIAM REVIEW, 2017, 59 (01) : 65 - 98
  • [7] Ranking individual habitat patches as connectivity providers: Integrating network analysis and patch removal experiments
    Bodin, Orjan
    Saura, Santiago
    [J]. ECOLOGICAL MODELLING, 2010, 221 (19) : 2393 - 2405
  • [8] FACTORING AND WEIGHTING APPROACHES TO STATUS SCORES AND CLIQUE IDENTIFICATION
    BONACICH, P
    [J]. JOURNAL OF MATHEMATICAL SOCIOLOGY, 1972, 2 (01) : 113 - 120
  • [9] A graph-theoretic perspective on centrality
    Borgatti, Stephen P.
    Everett, Martin G.
    [J]. SOCIAL NETWORKS, 2006, 28 (04) : 466 - 484
  • [10] Caswell H., 2019, Sensitivity Analysis: Matrix Methods in Demography and Ecology