Extracellular cytochrome nanowires appear to be ubiquitous in prokaryotes

被引:39
作者
Baquero, Diana P. [1 ]
Cvirkaite-Krupovic, Virginija [1 ]
Hu, Shengen Shawn [2 ]
Fields, Jessie Lynda [3 ]
Liu, Xing [4 ]
Rensing, Christopher [4 ]
Egelman, Edward H. [2 ]
Krupovic, Mart [1 ]
Wang, Fengbin [2 ,3 ,5 ]
机构
[1] Univ Paris Cite, Archaeal Virol Unit, CNRS UMR6047, Inst Pasteur, F-75015 Paris, France
[2] Univ Virginia, Sch Med, Dept Biochem & Mol Genet, Charlottesville, VA 22903 USA
[3] Univ Alabama Birmingham, Dept Biochem & Mol Genet, Birmingham, AL 35233 USA
[4] Fujian Agr & Forestry Univ, Coll Resources & Environm, Fujian Prov Key Lab Soil Environm Hlth & Regulat, Fuzhou 350002, Fujian, Peoples R China
[5] Univ Alabama Birmingham, ONeal Comprehens Canc Ctr, Birmingham, AL 35233 USA
关键词
ELECTRON-TRANSFER; CRYO-EM; X-RAY; HELICAL FILAMENTS; CRYSTAL-STRUCTURE; SP-NOV; REDUCTASE; RECONSTRUCTION; REVEALS; TOOLS;
D O I
10.1016/j.cell.2023.05.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Electrically conductive appendages from the anaerobic bacterium Geobacter sulfurreducens, recently iden-tified as extracellular cytochrome nanowires (ECNs), have received wide attention due to numerous potential applications. However, whether other organisms employ similar ECNs for electron transfer remains unknown. Here, using cryoelectron microscopy, we describe the atomic structures of two ECNs from two major orders of hyperthermophilic archaea present in deep-sea hydrothermal vents and terrestrial hot springs. Homologs of Archaeoglobus veneficus ECN are widespread among mesophilic methane-oxidizing Methanoperedena-ceae, alkane-degrading Syntrophoarchaeales archaea, and in the recently described megaplasmids called Borgs. The ECN protein subunits lack similarities in their folds; however, they share a common heme arrange-ment, suggesting an evolutionarily optimized heme packing for efficient electron transfer. The detection of ECNs in archaea suggests that filaments containing closely stacked hemes may be a common and wide-spread mechanism for long-range electron transfer in both prokaryotic domains of life.
引用
收藏
页码:2853 / +
页数:21
相关论文
共 80 条
[61]   MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets [J].
Steinegger, Martin ;
Soeding, Johannes .
NATURE BIOTECHNOLOGY, 2017, 35 (11) :1026-1028
[62]   Engineering Geobacter pili to produce metal:organic filaments [J].
Szmuc, Eric ;
Walker, David J. F. ;
Kireev, Dmitry ;
Akinwande, Deji ;
Lovley, Derek R. ;
Keitz, Benjamin ;
Ellington, Andrew .
BIOSENSORS & BIOELECTRONICS, 2023, 222
[63]   SignalP 6.0 predicts all five types of signal peptides using protein language models [J].
Teufel, Felix ;
Almagro Armenteros, Jose Juan ;
Johansen, Alexander Rosenberg ;
Gislason, Magnus Halldor ;
Pihl, Silas Irby ;
Tsirigos, Konstantinos D. ;
Winther, Ole ;
Brunak, Soren ;
von Heijne, Gunnar ;
Nielsen, Henrik .
NATURE BIOTECHNOLOGY, 2022, 40 (07) :1023-+
[64]   Structural study of the X-ray-induced enzymatic reaction of octahaem cytochrome c nitrite reductase [J].
Trofimov, A. A. ;
Polyakov, K. M. ;
Lazarenko, V. A. ;
Popov, A. N. ;
Tikhonova, T. V. ;
Tikhonov, A. V. ;
Popov, V. O. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2015, 71 :1087-1094
[65]  
Van Kempen M., 2022, Foldseek: fast and accurate protein structure search, DOI [10.1101/2022.02.07.479398, DOI 10.1101/2022.02.07.479398]
[66]  
van Wonderen J.H., 2019, J AM CHEM SOC
[67]  
van Wonderen J.H., 2021, PROC
[68]   Microbiological evidence for Fe(III) reduction on early Earth [J].
Vargas, M ;
Kashefi, K ;
Blunt-Harris, EL ;
Lovley, DR .
NATURE, 1998, 395 (6697) :65-67
[69]  
Wang F., 2019, CELL, V177, P10, DOI [10.1016/j, DOI 10.1016/J]
[70]   Archaeal bundling pili of Pyrobaculum calidifontis reveal similarities between archaeal and bacterial biofilms [J].
Wang, Fengbin ;
Cvirkaite-Krupovic, Virginija ;
Krupovic, Mart ;
Egelman, Edward H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2022, 119 (26)