Molecular docking and biophysical studies on the interaction between thiram and human hemoglobin

被引:19
作者
Salam, Samreen [1 ]
Arif, Amin [1 ]
Nabi, Faisal [2 ]
Mahmood, Riaz [1 ]
机构
[1] Aligarh Muslim Univ, Fac Life Sci, Dept Biochem, Aligarh 202002, Uttar Pradesh, India
[2] Aligarh Muslim Univ, Interdisciplinary Biotechnol Unit, Aligarh 202002, Uttar Pradesh, India
关键词
Human hemoglobin; Thiram; CD; FT-IR; Molecular docking; GOLD NANOPARTICLES; INSIGHTS; THERMODYNAMICS; FLUORESCENCE; SPECTROSCOPY;
D O I
10.1016/j.molstruc.2022.134188
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Thiram is a dithiocarbamate compound that is widely used as a fungicide and ectoparasiticide in agricultural fields. It is also used in industry as an accelerator and chelating agent, and commercially as a sunscreen and bactericide. Studies have shown that thiram is harmful to animals and human health. Here, we have studied the interaction of human hemoglobin (Hb) with thiram by UV-visible absorption and fluorescence spectroscopy, Fourier transform infrared spectroscopy (FT-IR), circular dichroism (CD) and molecular docking techniques. Thiram quenched the fluorescence emission of Hb by the static quenching mechanism. Analysis of thermodynamic parameters showed that van der Waals forces and hydrogen bonds were mainly involved in the interaction between Hb and thiram. The results obtained from FT-IR, CD and synchronous fluorescence spectroscopy revealed that binding of thiram induced changes in the conformation and microenvironment of Hb. Thiram inhibited the peroxidase activity of Hb in a concentration-dependent manner, which further confirmed its binding to Hb. The experimentally calculated free energy change for Hb-thiram complex was approximately equal to theoretical docking energy value. In-silico docking predicted the presence of one thiram binding site in Hb, which is in agreement with the findings of spectroscopic experiments. Our results provide insight into the binding mechanism between Hb and thiram, which in turn will serve as the basis for assessing the effect of thiram on other cellular proteins. (C) 2022 Elsevier B.V. All rights reserved.
引用
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页数:9
相关论文
共 48 条
[1]   Assessment of mutagenic potential of thiram [J].
Agrawal, RC ;
Shukla, Y ;
Mehrotra, NK .
FOOD AND CHEMICAL TOXICOLOGY, 1997, 35 (05) :523-525
[2]   Biomolecular interactions and binding dynamics of tyrosine kinase inhibitor erdafitinib, with human serum albumin [J].
Amir, Mohd ;
Qureshi, Mohd Aamir ;
Javed, Saleem .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2021, 39 (11) :3934-3947
[3]   Interaction of toxic azo dyes with heme protein: Biophysical insights into the binding aspect of the food additive amaranth with human hemoglobin [J].
Basu, Anirban ;
Kumar, Gopinatha Suresh .
JOURNAL OF HAZARDOUS MATERIALS, 2015, 289 :204-209
[4]   Assessing the effects of Thiram to oxidative stress responses in a freshwater bioindicator cladoceran (Daphnia magna) [J].
Belaid, Chahrazad ;
Sbartai, Ibtissem .
CHEMOSPHERE, 2021, 268
[5]   Molecular insight into the binding aspects of benzo[c]phenanthridine alkaloid nitidine with bovine hemoglobin: A biophysical exploration [J].
Bhuiya, Sutanwi ;
Chowdhury, Susmita ;
Das, Suman .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2019, 223
[6]   Molecular interaction of fluorescent carbon dots from mature vinegar with human hemoglobin: Insights from spectroscopy, thermodynamics and AFM [J].
Cao, Lin ;
Li, Jiaqi ;
Song, Yukun ;
Cong, Shuang ;
Wang, Haitao ;
Tan, Mingqian .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2021, 167 :415-422
[7]   Studies on the interaction of salvianolic acid B with human hemoglobin by multi-spectroscopic techniques [J].
Chen, Tingting ;
Zhu, Shajun ;
Cao, Hui ;
Shang, Yanfang ;
Wang, Miao ;
Jiang, Guoqing ;
Shi, Yujun ;
Lu, Tianhong .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2011, 78 (04) :1295-1301
[8]   The case for thyroid disruption in early life stage exposures to thiram in zebrafish (Danio rerio) [J].
Chen, Xing ;
Fang, Mingliang ;
Chernick, Melissa ;
Wang, Feng ;
Yang, Jingfeng ;
Yu, Yongli ;
Zheng, Na ;
Teraoka, Hiroki ;
Nanba, Satomi ;
Hiraga, Takeo ;
Hinton, David E. ;
Dong, Wu .
GENERAL AND COMPARATIVE ENDOCRINOLOGY, 2019, 271 :73-81
[9]  
Correira M., 2016, Encyclopedia of Food and Health, P169, DOI DOI 10.1016/B978-0-12-384947-2.00342-1
[10]   Hemoglobin bioconjugates with surface-protected gold nanoparticles in aqueous media: The stability depends on solution pH and protein properties [J].
del Cano, Rafael ;
Mateus, Lucia ;
Sanchez-Obrero, Guadalupe ;
Manuel Sevilla, Jose ;
Madueno, Rafael ;
Blazquez, Manuel ;
Pineda, Teresa .
JOURNAL OF COLLOID AND INTERFACE SCIENCE, 2017, 505 :1165-1171